Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yihU and yihT are separated by 23 nucleotides yihT and yihS are separated by 15 nucleotides yihS and MCAODC_04540 are separated by 66 nucleotides
MCAODC_04525: yihU - sulfolactaldehyde 3-reductase, at 916,011 to 916,907
yihU
MCAODC_04530: yihT - sulfofructosephosphate aldolase, at 916,931 to 917,809
yihT
MCAODC_04535: yihS - sulfoquinovose isomerase, at 917,825 to 919,066
yihS
MCAODC_04540: MCAODC_04540 - Aldose epimerase, at 919,133 to 920,035
_04540
Position (kb) 917
918
919
920 Strain fitness (log2 ratio) -2
-1
0
1
2 at 916.924 kb on + strand at 916.936 kb on + strand at 916.936 kb on + strand at 916.936 kb on + strand at 916.937 kb on - strand at 916.937 kb on - strand at 916.937 kb on - strand at 916.937 kb on - strand at 916.940 kb on + strand at 916.940 kb on + strand at 916.940 kb on + strand at 916.941 kb on - strand at 916.941 kb on - strand at 916.941 kb on - strand at 917.064 kb on + strand, within yihT at 917.064 kb on + strand, within yihT at 917.065 kb on - strand, within yihT at 917.065 kb on - strand, within yihT at 917.065 kb on - strand, within yihT at 917.105 kb on + strand, within yihT at 917.233 kb on - strand, within yihT at 917.236 kb on + strand, within yihT at 917.237 kb on - strand, within yihT at 917.350 kb on + strand, within yihT at 917.394 kb on + strand, within yihT at 917.395 kb on - strand, within yihT at 917.395 kb on - strand, within yihT at 917.505 kb on - strand, within yihT at 917.505 kb on - strand, within yihT at 917.505 kb on - strand, within yihT at 917.531 kb on - strand, within yihT at 917.587 kb on + strand, within yihT at 917.587 kb on + strand, within yihT at 917.587 kb on + strand, within yihT at 917.716 kb on - strand, within yihT at 917.844 kb on + strand at 917.907 kb on + strand at 917.911 kb on - strand at 917.911 kb on - strand at 917.989 kb on + strand, within yihS at 917.989 kb on + strand, within yihS at 917.990 kb on - strand, within yihS at 917.990 kb on - strand, within yihS at 918.002 kb on + strand, within yihS at 918.002 kb on + strand, within yihS at 918.002 kb on + strand, within yihS at 918.003 kb on - strand, within yihS at 918.061 kb on + strand, within yihS at 918.062 kb on - strand, within yihS at 918.062 kb on - strand, within yihS at 918.062 kb on - strand, within yihS at 918.107 kb on + strand, within yihS at 918.155 kb on + strand, within yihS at 918.234 kb on - strand, within yihS at 918.234 kb on - strand, within yihS at 918.257 kb on + strand, within yihS at 918.258 kb on - strand, within yihS at 918.326 kb on + strand, within yihS at 918.346 kb on + strand, within yihS at 918.369 kb on + strand, within yihS at 918.370 kb on - strand, within yihS at 918.377 kb on + strand, within yihS at 918.378 kb on - strand, within yihS at 918.384 kb on + strand, within yihS at 918.457 kb on + strand, within yihS at 918.457 kb on + strand, within yihS at 918.457 kb on + strand, within yihS at 918.457 kb on + strand, within yihS at 918.458 kb on - strand, within yihS at 918.556 kb on + strand, within yihS at 918.556 kb on + strand, within yihS at 918.589 kb on - strand, within yihS at 918.649 kb on - strand, within yihS at 918.723 kb on - strand, within yihS at 918.723 kb on - strand, within yihS at 918.724 kb on + strand, within yihS at 918.725 kb on - strand, within yihS at 918.809 kb on + strand, within yihS at 918.809 kb on + strand, within yihS at 918.809 kb on + strand, within yihS at 918.810 kb on - strand, within yihS at 918.810 kb on - strand, within yihS at 918.875 kb on + strand, within yihS at 918.928 kb on + strand, within yihS at 918.928 kb on + strand, within yihS at 918.929 kb on - strand, within yihS at 918.929 kb on - strand, within yihS at 918.929 kb on - strand, within yihS at 918.964 kb on + strand at 918.968 kb on + strand at 918.968 kb on + strand at 918.968 kb on + strand at 918.969 kb on - strand at 918.969 kb on - strand at 918.969 kb on - strand at 918.969 kb on - strand at 919.104 kb on + strand at 919.105 kb on - strand at 919.105 kb on - strand at 919.119 kb on + strand at 919.119 kb on + strand at 919.254 kb on + strand, within MCAODC_04540 at 919.254 kb on + strand, within MCAODC_04540 at 919.254 kb on + strand, within MCAODC_04540 at 919.255 kb on - strand, within MCAODC_04540 at 919.255 kb on - strand, within MCAODC_04540 at 919.258 kb on + strand, within MCAODC_04540 at 919.267 kb on + strand, within MCAODC_04540 at 919.267 kb on + strand, within MCAODC_04540 at 919.268 kb on - strand, within MCAODC_04540 at 919.268 kb on - strand, within MCAODC_04540 at 919.309 kb on + strand, within MCAODC_04540 at 919.365 kb on - strand, within MCAODC_04540 at 919.447 kb on - strand, within MCAODC_04540 at 919.447 kb on - strand, within MCAODC_04540 at 919.491 kb on - strand, within MCAODC_04540 at 919.598 kb on + strand, within MCAODC_04540 at 919.598 kb on + strand, within MCAODC_04540 at 919.598 kb on + strand, within MCAODC_04540 at 919.599 kb on - strand, within MCAODC_04540 at 919.619 kb on + strand, within MCAODC_04540 at 919.619 kb on + strand, within MCAODC_04540 at 919.624 kb on - strand, within MCAODC_04540 at 919.635 kb on + strand, within MCAODC_04540 at 919.635 kb on + strand, within MCAODC_04540 at 919.635 kb on + strand, within MCAODC_04540 at 919.635 kb on + strand, within MCAODC_04540 at 919.652 kb on + strand, within MCAODC_04540 at 919.652 kb on + strand, within MCAODC_04540 at 919.653 kb on - strand, within MCAODC_04540 at 919.653 kb on - strand, within MCAODC_04540
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 916,924 + +0.6 916,936 + +0.1 916,936 + -0.1 916,936 + -1.6 916,937 - -1.5 916,937 - -1.1 916,937 - -0.7 916,937 - -1.7 916,940 + -0.1 916,940 + +0.9 916,940 + +1.1 916,941 - -1.0 916,941 - -0.5 916,941 - +0.2 917,064 + yihT MCAODC_04530 0.15 -1.2 917,064 + yihT MCAODC_04530 0.15 -0.4 917,065 - yihT MCAODC_04530 0.15 -0.2 917,065 - yihT MCAODC_04530 0.15 -1.2 917,065 - yihT MCAODC_04530 0.15 +1.1 917,105 + yihT MCAODC_04530 0.20 +2.7 917,233 - yihT MCAODC_04530 0.34 -1.2 917,236 + yihT MCAODC_04530 0.35 -0.5 917,237 - yihT MCAODC_04530 0.35 -0.1 917,350 + yihT MCAODC_04530 0.48 -0.5 917,394 + yihT MCAODC_04530 0.53 -0.7 917,395 - yihT MCAODC_04530 0.53 -1.5 917,395 - yihT MCAODC_04530 0.53 +0.1 917,505 - yihT MCAODC_04530 0.65 -0.9 917,505 - yihT MCAODC_04530 0.65 +0.5 917,505 - yihT MCAODC_04530 0.65 -1.6 917,531 - yihT MCAODC_04530 0.68 -0.7 917,587 + yihT MCAODC_04530 0.75 -2.4 917,587 + yihT MCAODC_04530 0.75 -0.2 917,587 + yihT MCAODC_04530 0.75 -0.7 917,716 - yihT MCAODC_04530 0.89 -1.2 917,844 + +0.3 917,907 + +0.1 917,911 - -2.4 917,911 - -0.7 917,989 + yihS MCAODC_04535 0.13 +0.5 917,989 + yihS MCAODC_04535 0.13 +0.1 917,990 - yihS MCAODC_04535 0.13 -0.9 917,990 - yihS MCAODC_04535 0.13 -0.7 918,002 + yihS MCAODC_04535 0.14 -0.0 918,002 + yihS MCAODC_04535 0.14 -0.3 918,002 + yihS MCAODC_04535 0.14 +1.3 918,003 - yihS MCAODC_04535 0.14 -0.2 918,061 + yihS MCAODC_04535 0.19 +0.1 918,062 - yihS MCAODC_04535 0.19 +0.8 918,062 - yihS MCAODC_04535 0.19 -2.0 918,062 - yihS MCAODC_04535 0.19 -1.1 918,107 + yihS MCAODC_04535 0.23 +1.3 918,155 + yihS MCAODC_04535 0.27 -1.3 918,234 - yihS MCAODC_04535 0.33 -0.2 918,234 - yihS MCAODC_04535 0.33 -0.2 918,257 + yihS MCAODC_04535 0.35 +0.9 918,258 - yihS MCAODC_04535 0.35 -1.0 918,326 + yihS MCAODC_04535 0.40 -1.9 918,346 + yihS MCAODC_04535 0.42 +1.1 918,369 + yihS MCAODC_04535 0.44 +1.0 918,370 - yihS MCAODC_04535 0.44 +0.1 918,377 + yihS MCAODC_04535 0.44 +0.6 918,378 - yihS MCAODC_04535 0.45 -0.9 918,384 + yihS MCAODC_04535 0.45 -0.0 918,457 + yihS MCAODC_04535 0.51 +1.1 918,457 + yihS MCAODC_04535 0.51 +1.8 918,457 + yihS MCAODC_04535 0.51 +1.3 918,457 + yihS MCAODC_04535 0.51 -1.2 918,458 - yihS MCAODC_04535 0.51 -2.3 918,556 + yihS MCAODC_04535 0.59 +1.0 918,556 + yihS MCAODC_04535 0.59 +1.8 918,589 - yihS MCAODC_04535 0.62 +0.1 918,649 - yihS MCAODC_04535 0.66 -1.0 918,723 - yihS MCAODC_04535 0.72 -0.0 918,723 - yihS MCAODC_04535 0.72 +0.2 918,724 + yihS MCAODC_04535 0.72 +0.1 918,725 - yihS MCAODC_04535 0.72 -1.4 918,809 + yihS MCAODC_04535 0.79 -1.1 918,809 + yihS MCAODC_04535 0.79 +1.0 918,809 + yihS MCAODC_04535 0.79 -0.1 918,810 - yihS MCAODC_04535 0.79 -1.0 918,810 - yihS MCAODC_04535 0.79 +1.7 918,875 + yihS MCAODC_04535 0.85 -0.9 918,928 + yihS MCAODC_04535 0.89 +0.5 918,928 + yihS MCAODC_04535 0.89 +0.6 918,929 - yihS MCAODC_04535 0.89 +0.1 918,929 - yihS MCAODC_04535 0.89 +1.7 918,929 - yihS MCAODC_04535 0.89 -0.8 918,964 + -0.1 918,968 + -0.2 918,968 + -0.3 918,968 + -0.8 918,969 - +1.1 918,969 - -1.1 918,969 - -0.2 918,969 - +0.3 919,104 + -0.1 919,105 - +0.5 919,105 - -1.5 919,119 + +0.3 919,119 + -0.3 919,254 + MCAODC_04540 0.13 -0.9 919,254 + MCAODC_04540 0.13 -0.2 919,254 + MCAODC_04540 0.13 -0.4 919,255 - MCAODC_04540 0.14 -0.3 919,255 - MCAODC_04540 0.14 +0.5 919,258 + MCAODC_04540 0.14 -0.2 919,267 + MCAODC_04540 0.15 -1.3 919,267 + MCAODC_04540 0.15 +0.1 919,268 - MCAODC_04540 0.15 -0.9 919,268 - MCAODC_04540 0.15 -1.7 919,309 + MCAODC_04540 0.19 +0.7 919,365 - MCAODC_04540 0.26 -0.9 919,447 - MCAODC_04540 0.35 -0.8 919,447 - MCAODC_04540 0.35 +0.9 919,491 - MCAODC_04540 0.40 +0.8 919,598 + MCAODC_04540 0.51 +2.1 919,598 + MCAODC_04540 0.51 -0.3 919,598 + MCAODC_04540 0.51 -1.8 919,599 - MCAODC_04540 0.52 +0.6 919,619 + MCAODC_04540 0.54 +0.3 919,619 + MCAODC_04540 0.54 -2.3 919,624 - MCAODC_04540 0.54 -0.5 919,635 + MCAODC_04540 0.56 -0.3 919,635 + MCAODC_04540 0.56 +0.0 919,635 + MCAODC_04540 0.56 +0.0 919,635 + MCAODC_04540 0.56 +0.9 919,652 + MCAODC_04540 0.57 -0.5 919,652 + MCAODC_04540 0.57 -0.1 919,653 - MCAODC_04540 0.58 -0.5 919,653 - MCAODC_04540 0.58 +1.5
Or see this region's nucleotide sequence