Strain Fitness in Escherichia coli ECRC101 around MCAODC_02760

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthflC and hflK are separated by 2 nucleotideshflK and hflX are separated by 85 nucleotides MCAODC_02755: hflC - protease modulator HflC, at 556,035 to 557,039 hflC MCAODC_02760: hflK - FtsH protease activity modulator HflK, at 557,042 to 558,301 hflK MCAODC_02765: hflX - GTPase HflX, at 558,387 to 559,667 hflX Position (kb) 557 558 559Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 556.066 kb on + strandat 556.067 kb on - strandat 556.370 kb on - strand, within hflCat 556.556 kb on + strand, within hflCat 556.677 kb on - strand, within hflCat 556.730 kb on - strand, within hflCat 556.766 kb on - strand, within hflCat 556.766 kb on - strand, within hflCat 556.766 kb on - strand, within hflCat 556.873 kb on - strand, within hflCat 556.930 kb on - strand, within hflCat 556.950 kb on - strandat 556.991 kb on - strandat 556.991 kb on - strandat 557.016 kb on - strandat 557.098 kb on + strandat 557.490 kb on + strand, within hflKat 557.491 kb on - strand, within hflKat 557.512 kb on - strand, within hflKat 557.663 kb on - strand, within hflKat 557.711 kb on - strand, within hflKat 557.779 kb on - strand, within hflKat 557.779 kb on - strand, within hflKat 557.966 kb on - strand, within hflKat 558.008 kb on - strand, within hflKat 558.010 kb on - strand, within hflKat 558.032 kb on - strand, within hflKat 558.173 kb on - strand, within hflKat 558.315 kb on - strandat 558.315 kb on - strandat 558.423 kb on - strandat 558.468 kb on + strandat 558.469 kb on - strandat 558.469 kb on - strandat 558.469 kb on - strandat 558.469 kb on - strandat 558.469 kb on - strandat 558.469 kb on - strandat 558.563 kb on + strand, within hflXat 558.564 kb on - strand, within hflXat 558.564 kb on - strand, within hflXat 558.564 kb on - strand, within hflXat 558.564 kb on - strand, within hflXat 558.564 kb on - strand, within hflXat 558.564 kb on - strand, within hflXat 558.564 kb on - strand, within hflXat 558.564 kb on - strand, within hflXat 558.564 kb on - strand, within hflXat 558.564 kb on - strand, within hflXat 558.708 kb on - strand, within hflXat 558.796 kb on - strand, within hflXat 558.856 kb on - strand, within hflXat 558.867 kb on - strand, within hflXat 559.001 kb on - strand, within hflXat 559.035 kb on - strand, within hflXat 559.053 kb on - strand, within hflXat 559.053 kb on - strand, within hflXat 559.055 kb on - strand, within hflXat 559.074 kb on - strand, within hflXat 559.147 kb on - strand, within hflXat 559.147 kb on - strand, within hflX

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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556,066 + -2.8
556,067 - +2.1
556,370 - hflC MCAODC_02755 0.33 +2.6
556,556 + hflC MCAODC_02755 0.52 -0.7
556,677 - hflC MCAODC_02755 0.64 -0.1
556,730 - hflC MCAODC_02755 0.69 -0.9
556,766 - hflC MCAODC_02755 0.73 +0.7
556,766 - hflC MCAODC_02755 0.73 +2.1
556,766 - hflC MCAODC_02755 0.73 +0.3
556,873 - hflC MCAODC_02755 0.83 +0.1
556,930 - hflC MCAODC_02755 0.89 +1.1
556,950 - -0.3
556,991 - -0.1
556,991 - +2.5
557,016 - -0.4
557,098 + -1.8
557,490 + hflK MCAODC_02760 0.36 -0.4
557,491 - hflK MCAODC_02760 0.36 +2.1
557,512 - hflK MCAODC_02760 0.37 -0.5
557,663 - hflK MCAODC_02760 0.49 +1.5
557,711 - hflK MCAODC_02760 0.53 -1.5
557,779 - hflK MCAODC_02760 0.58 -1.4
557,779 - hflK MCAODC_02760 0.58 -0.9
557,966 - hflK MCAODC_02760 0.73 +0.3
558,008 - hflK MCAODC_02760 0.77 +1.6
558,010 - hflK MCAODC_02760 0.77 +1.3
558,032 - hflK MCAODC_02760 0.79 -0.0
558,173 - hflK MCAODC_02760 0.90 +1.1
558,315 - -0.6
558,315 - -0.3
558,423 - -0.2
558,468 + -1.9
558,469 - +0.8
558,469 - +0.3
558,469 - +0.6
558,469 - +0.1
558,469 - -1.5
558,469 - +1.5
558,563 + hflX MCAODC_02765 0.14 +0.1
558,564 - hflX MCAODC_02765 0.14 -0.3
558,564 - hflX MCAODC_02765 0.14 -1.0
558,564 - hflX MCAODC_02765 0.14 +1.1
558,564 - hflX MCAODC_02765 0.14 +0.1
558,564 - hflX MCAODC_02765 0.14 +0.4
558,564 - hflX MCAODC_02765 0.14 +0.7
558,564 - hflX MCAODC_02765 0.14 +0.1
558,564 - hflX MCAODC_02765 0.14 +1.1
558,564 - hflX MCAODC_02765 0.14 -0.2
558,564 - hflX MCAODC_02765 0.14 -1.3
558,708 - hflX MCAODC_02765 0.25 +1.1
558,796 - hflX MCAODC_02765 0.32 +2.7
558,856 - hflX MCAODC_02765 0.37 +0.1
558,867 - hflX MCAODC_02765 0.37 -1.1
559,001 - hflX MCAODC_02765 0.48 +0.3
559,035 - hflX MCAODC_02765 0.51 -0.3
559,053 - hflX MCAODC_02765 0.52 -1.3
559,053 - hflX MCAODC_02765 0.52 +0.1
559,055 - hflX MCAODC_02765 0.52 +0.5
559,074 - hflX MCAODC_02765 0.54 -0.3
559,147 - hflX MCAODC_02765 0.59 -0.5
559,147 - hflX MCAODC_02765 0.59 -3.9

Or see this region's nucleotide sequence