Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ulaR and yjfP overlap by 4 nucleotides yjfP and bsmA are separated by 181 nucleotides bsmA and yjfN are separated by 148 nucleotides yjfN and aidB are separated by 116 nucleotides
MCAODC_02675: ulaR - HTH-type transcriptional regulator UlaR, at 541,885 to 542,640
ulaR
MCAODC_02680: yjfP - esterase, at 542,637 to 543,386
yjfP
MCAODC_02685: bsmA - biofilm peroxide resistance protein BsmA, at 543,568 to 543,897
bsmA
MCAODC_02690: yjfN - protease activator YjfN, at 544,046 to 544,321
yjfN
MCAODC_02695: aidB - isovaleryl-CoA dehydrogenase, at 544,438 to 546,063
aidB
Position (kb) 543
544 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 542.638 kb on + strand at 542.638 kb on + strand at 542.687 kb on + strand at 542.688 kb on - strand at 542.732 kb on + strand, within yjfP at 542.770 kb on - strand, within yjfP at 542.820 kb on + strand, within yjfP at 542.821 kb on - strand, within yjfP at 542.835 kb on - strand, within yjfP at 542.835 kb on - strand, within yjfP at 542.957 kb on + strand, within yjfP at 542.957 kb on + strand, within yjfP at 542.958 kb on - strand, within yjfP at 542.958 kb on - strand, within yjfP at 542.962 kb on + strand, within yjfP at 542.987 kb on + strand, within yjfP at 542.987 kb on + strand, within yjfP at 543.105 kb on + strand, within yjfP at 543.106 kb on - strand, within yjfP at 543.106 kb on - strand, within yjfP at 543.106 kb on - strand, within yjfP at 543.125 kb on + strand, within yjfP at 543.125 kb on + strand, within yjfP at 543.125 kb on + strand, within yjfP at 543.126 kb on - strand, within yjfP at 543.132 kb on + strand, within yjfP at 543.132 kb on + strand, within yjfP at 543.253 kb on + strand, within yjfP at 543.253 kb on + strand, within yjfP at 543.253 kb on + strand, within yjfP at 543.254 kb on - strand, within yjfP at 543.254 kb on - strand, within yjfP at 543.257 kb on + strand, within yjfP at 543.257 kb on + strand, within yjfP at 543.257 kb on + strand, within yjfP at 543.257 kb on + strand, within yjfP at 543.257 kb on + strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.259 kb on + strand, within yjfP at 543.259 kb on + strand, within yjfP at 543.259 kb on + strand, within yjfP at 543.259 kb on + strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.278 kb on + strand, within yjfP at 543.279 kb on - strand, within yjfP at 543.279 kb on - strand, within yjfP at 543.335 kb on - strand at 543.343 kb on - strand at 543.353 kb on + strand at 543.353 kb on + strand at 543.353 kb on + strand at 543.375 kb on + strand at 543.376 kb on - strand at 543.409 kb on - strand at 543.409 kb on - strand at 543.452 kb on + strand at 543.452 kb on + strand at 543.452 kb on + strand at 543.453 kb on - strand at 543.453 kb on - strand at 543.459 kb on + strand at 543.459 kb on + strand at 543.459 kb on + strand at 543.460 kb on - strand at 543.478 kb on - strand at 543.518 kb on + strand at 543.546 kb on + strand at 543.546 kb on + strand at 543.546 kb on + strand at 543.547 kb on - strand at 543.555 kb on - strand at 543.562 kb on + strand at 543.563 kb on - strand at 543.563 kb on - strand at 543.563 kb on - strand at 543.567 kb on + strand at 543.568 kb on - strand at 543.568 kb on - strand at 543.573 kb on + strand at 543.585 kb on + strand at 543.585 kb on + strand at 543.586 kb on - strand at 543.586 kb on - strand at 543.586 kb on - strand at 543.586 kb on - strand at 543.588 kb on + strand at 543.588 kb on + strand at 543.588 kb on + strand at 543.589 kb on - strand at 543.589 kb on - strand at 543.589 kb on - strand at 543.594 kb on + strand at 543.594 kb on + strand at 543.594 kb on + strand at 543.595 kb on - strand at 543.595 kb on - strand at 543.599 kb on - strand at 543.614 kb on + strand, within bsmA at 543.615 kb on - strand, within bsmA at 543.617 kb on + strand, within bsmA at 543.617 kb on + strand, within bsmA at 543.618 kb on - strand, within bsmA at 543.618 kb on - strand, within bsmA at 543.632 kb on + strand, within bsmA at 543.632 kb on + strand, within bsmA at 543.633 kb on - strand, within bsmA at 543.633 kb on - strand, within bsmA at 543.642 kb on + strand, within bsmA at 543.643 kb on - strand, within bsmA at 543.657 kb on + strand, within bsmA at 543.657 kb on + strand, within bsmA at 543.662 kb on + strand, within bsmA at 543.663 kb on - strand, within bsmA at 543.725 kb on + strand, within bsmA at 543.734 kb on + strand, within bsmA at 543.738 kb on + strand, within bsmA at 543.743 kb on + strand, within bsmA at 543.743 kb on + strand, within bsmA at 543.744 kb on - strand, within bsmA at 543.744 kb on - strand, within bsmA at 543.744 kb on - strand, within bsmA at 543.779 kb on + strand, within bsmA at 543.820 kb on + strand, within bsmA at 543.823 kb on + strand, within bsmA at 543.823 kb on + strand, within bsmA at 543.823 kb on + strand, within bsmA at 543.823 kb on + strand, within bsmA at 543.824 kb on - strand, within bsmA at 543.824 kb on - strand, within bsmA at 543.869 kb on - strand at 543.891 kb on + strand at 543.891 kb on + strand at 543.895 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.909 kb on + strand at 543.910 kb on - strand at 543.910 kb on - strand at 543.910 kb on - strand at 543.910 kb on - strand at 543.910 kb on - strand at 543.910 kb on - strand at 543.910 kb on - strand at 543.910 kb on - strand at 543.910 kb on - strand at 543.910 kb on - strand at 543.913 kb on + strand at 543.913 kb on + strand at 543.913 kb on + strand at 543.913 kb on + strand at 543.914 kb on - strand at 543.914 kb on - strand at 543.923 kb on + strand at 543.923 kb on + strand at 543.923 kb on + strand at 543.924 kb on - strand at 543.924 kb on - strand at 543.924 kb on - strand at 543.962 kb on + strand at 543.963 kb on - strand at 543.963 kb on - strand at 543.963 kb on - strand at 543.963 kb on - strand at 543.990 kb on + strand at 544.056 kb on + strand at 544.056 kb on + strand at 544.056 kb on + strand at 544.056 kb on + strand at 544.056 kb on + strand at 544.057 kb on - strand at 544.057 kb on - strand at 544.057 kb on - strand at 544.081 kb on - strand, within yjfN at 544.089 kb on - strand, within yjfN at 544.089 kb on - strand, within yjfN at 544.159 kb on - strand, within yjfN at 544.181 kb on - strand, within yjfN at 544.181 kb on - strand, within yjfN at 544.181 kb on - strand, within yjfN at 544.258 kb on + strand, within yjfN at 544.259 kb on - strand, within yjfN at 544.259 kb on - strand, within yjfN at 544.262 kb on - strand, within yjfN at 544.268 kb on + strand, within yjfN at 544.268 kb on + strand, within yjfN at 544.268 kb on + strand, within yjfN at 544.268 kb on + strand, within yjfN at 544.269 kb on - strand, within yjfN at 544.269 kb on - strand, within yjfN at 544.288 kb on + strand, within yjfN at 544.289 kb on - strand, within yjfN at 544.309 kb on - strand at 544.313 kb on + strand at 544.313 kb on + strand at 544.313 kb on + strand at 544.313 kb on + strand at 544.313 kb on + strand at 544.313 kb on + strand at 544.314 kb on - strand at 544.314 kb on - strand at 544.330 kb on + strand at 544.331 kb on - strand at 544.431 kb on + strand at 544.434 kb on - strand at 544.439 kb on + strand at 544.440 kb on - strand at 544.471 kb on + strand at 544.471 kb on + strand at 544.471 kb on + strand at 544.471 kb on + strand at 544.472 kb on - strand at 544.472 kb on - strand at 544.516 kb on - strand at 544.516 kb on - strand at 544.519 kb on + strand at 544.519 kb on + strand at 544.519 kb on + strand at 544.520 kb on - strand at 544.520 kb on - strand at 544.562 kb on + strand at 544.563 kb on - strand at 544.563 kb on - strand at 544.563 kb on - strand at 544.597 kb on + strand at 544.597 kb on + strand at 544.598 kb on - strand at 544.598 kb on - strand at 544.608 kb on + strand, within aidB at 544.609 kb on - strand, within aidB at 544.638 kb on + strand, within aidB at 544.638 kb on + strand, within aidB at 544.639 kb on - strand, within aidB at 544.720 kb on + strand, within aidB at 544.728 kb on - strand, within aidB at 544.773 kb on + strand, within aidB at 544.773 kb on + strand, within aidB at 544.773 kb on + strand, within aidB at 544.773 kb on + strand, within aidB at 544.773 kb on + strand, within aidB at 544.773 kb on + strand, within aidB at 544.773 kb on + strand, within aidB at 544.773 kb on + strand, within aidB at 544.773 kb on + strand, within aidB at 544.773 kb on + strand, within aidB at 544.773 kb on + strand, within aidB at 544.773 kb on + strand, within aidB at 544.774 kb on - strand, within aidB at 544.774 kb on - strand, within aidB at 544.774 kb on - strand, within aidB at 544.776 kb on + strand, within aidB at 544.797 kb on + strand, within aidB at 544.797 kb on + strand, within aidB at 544.797 kb on + strand, within aidB at 544.896 kb on + strand, within aidB at 544.896 kb on + strand, within aidB at 544.897 kb on - strand, within aidB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 542,638 + +0.0 542,638 + -1.4 542,687 + -1.9 542,688 - +0.6 542,732 + yjfP MCAODC_02680 0.13 -1.0 542,770 - yjfP MCAODC_02680 0.18 +2.0 542,820 + yjfP MCAODC_02680 0.24 +0.2 542,821 - yjfP MCAODC_02680 0.25 -0.4 542,835 - yjfP MCAODC_02680 0.26 +1.2 542,835 - yjfP MCAODC_02680 0.26 -0.5 542,957 + yjfP MCAODC_02680 0.43 -0.3 542,957 + yjfP MCAODC_02680 0.43 -0.1 542,958 - yjfP MCAODC_02680 0.43 -1.4 542,958 - yjfP MCAODC_02680 0.43 -0.1 542,962 + yjfP MCAODC_02680 0.43 -1.8 542,987 + yjfP MCAODC_02680 0.47 -1.0 542,987 + yjfP MCAODC_02680 0.47 +0.2 543,105 + yjfP MCAODC_02680 0.62 -0.6 543,106 - yjfP MCAODC_02680 0.63 -0.5 543,106 - yjfP MCAODC_02680 0.63 +0.0 543,106 - yjfP MCAODC_02680 0.63 -1.2 543,125 + yjfP MCAODC_02680 0.65 +0.1 543,125 + yjfP MCAODC_02680 0.65 -0.3 543,125 + yjfP MCAODC_02680 0.65 -1.0 543,126 - yjfP MCAODC_02680 0.65 -0.3 543,132 + yjfP MCAODC_02680 0.66 -0.7 543,132 + yjfP MCAODC_02680 0.66 -1.9 543,253 + yjfP MCAODC_02680 0.82 +0.7 543,253 + yjfP MCAODC_02680 0.82 +0.2 543,253 + yjfP MCAODC_02680 0.82 -0.8 543,254 - yjfP MCAODC_02680 0.82 +1.3 543,254 - yjfP MCAODC_02680 0.82 -1.3 543,257 + yjfP MCAODC_02680 0.83 +1.2 543,257 + yjfP MCAODC_02680 0.83 +1.8 543,257 + yjfP MCAODC_02680 0.83 -1.2 543,257 + yjfP MCAODC_02680 0.83 +1.0 543,257 + yjfP MCAODC_02680 0.83 -0.2 543,258 - yjfP MCAODC_02680 0.83 -2.4 543,258 - yjfP MCAODC_02680 0.83 -0.3 543,258 - yjfP MCAODC_02680 0.83 -0.3 543,258 - yjfP MCAODC_02680 0.83 -0.1 543,258 - yjfP MCAODC_02680 0.83 -1.7 543,258 - yjfP MCAODC_02680 0.83 +0.4 543,258 - yjfP MCAODC_02680 0.83 +0.8 543,258 - yjfP MCAODC_02680 0.83 +2.3 543,259 + yjfP MCAODC_02680 0.83 +1.2 543,259 + yjfP MCAODC_02680 0.83 -1.7 543,259 + yjfP MCAODC_02680 0.83 -1.4 543,259 + yjfP MCAODC_02680 0.83 -0.6 543,260 - yjfP MCAODC_02680 0.83 -2.1 543,260 - yjfP MCAODC_02680 0.83 +0.7 543,260 - yjfP MCAODC_02680 0.83 +0.2 543,260 - yjfP MCAODC_02680 0.83 -1.1 543,260 - yjfP MCAODC_02680 0.83 -0.0 543,260 - yjfP MCAODC_02680 0.83 +1.0 543,260 - yjfP MCAODC_02680 0.83 -1.5 543,260 - yjfP MCAODC_02680 0.83 -0.5 543,278 + yjfP MCAODC_02680 0.85 -0.7 543,279 - yjfP MCAODC_02680 0.86 -0.7 543,279 - yjfP MCAODC_02680 0.86 -2.5 543,335 - -0.7 543,343 - -0.2 543,353 + +0.3 543,353 + +1.0 543,353 + +0.2 543,375 + +0.0 543,376 - +0.2 543,409 - +1.0 543,409 - -1.3 543,452 + +1.6 543,452 + -0.9 543,452 + +0.0 543,453 - +1.4 543,453 - -1.6 543,459 + +0.3 543,459 + +0.6 543,459 + -0.1 543,460 - +0.8 543,478 - -0.8 543,518 + +0.3 543,546 + +1.0 543,546 + -1.0 543,546 + +0.4 543,547 - -0.7 543,555 - -1.5 543,562 + +0.2 543,563 - -0.4 543,563 - -0.1 543,563 - -2.5 543,567 + -0.5 543,568 - -1.1 543,568 - -2.1 543,573 + -0.4 543,585 + -2.2 543,585 + -1.3 543,586 - +0.1 543,586 - -0.4 543,586 - -2.3 543,586 - -0.0 543,588 + +0.7 543,588 + +0.0 543,588 + -1.6 543,589 - +1.0 543,589 - +0.2 543,589 - +0.6 543,594 + -0.6 543,594 + +0.3 543,594 + +1.6 543,595 - +0.7 543,595 - +1.7 543,599 - -1.7 543,614 + bsmA MCAODC_02685 0.14 -0.2 543,615 - bsmA MCAODC_02685 0.14 -0.5 543,617 + bsmA MCAODC_02685 0.15 +0.7 543,617 + bsmA MCAODC_02685 0.15 +1.4 543,618 - bsmA MCAODC_02685 0.15 +1.4 543,618 - bsmA MCAODC_02685 0.15 -0.8 543,632 + bsmA MCAODC_02685 0.19 +0.5 543,632 + bsmA MCAODC_02685 0.19 -0.5 543,633 - bsmA MCAODC_02685 0.20 -1.0 543,633 - bsmA MCAODC_02685 0.20 +0.4 543,642 + bsmA MCAODC_02685 0.22 +2.6 543,643 - bsmA MCAODC_02685 0.23 -2.7 543,657 + bsmA MCAODC_02685 0.27 +1.0 543,657 + bsmA MCAODC_02685 0.27 +0.3 543,662 + bsmA MCAODC_02685 0.28 +0.7 543,663 - bsmA MCAODC_02685 0.29 -2.5 543,725 + bsmA MCAODC_02685 0.48 -2.0 543,734 + bsmA MCAODC_02685 0.50 +0.2 543,738 + bsmA MCAODC_02685 0.52 +0.1 543,743 + bsmA MCAODC_02685 0.53 -2.1 543,743 + bsmA MCAODC_02685 0.53 -0.3 543,744 - bsmA MCAODC_02685 0.53 +0.0 543,744 - bsmA MCAODC_02685 0.53 +0.6 543,744 - bsmA MCAODC_02685 0.53 -1.4 543,779 + bsmA MCAODC_02685 0.64 +0.9 543,820 + bsmA MCAODC_02685 0.76 -2.1 543,823 + bsmA MCAODC_02685 0.77 -0.6 543,823 + bsmA MCAODC_02685 0.77 +0.7 543,823 + bsmA MCAODC_02685 0.77 -0.3 543,823 + bsmA MCAODC_02685 0.77 +0.5 543,824 - bsmA MCAODC_02685 0.78 +0.0 543,824 - bsmA MCAODC_02685 0.78 -0.7 543,869 - +0.4 543,891 + +0.0 543,891 + +0.8 543,895 + -0.9 543,909 + -0.5 543,909 + -0.8 543,909 + -2.2 543,909 + +1.2 543,909 + +0.5 543,909 + +0.5 543,909 + -0.1 543,909 + +0.3 543,909 + -0.5 543,909 + -0.1 543,909 + -1.8 543,909 + +0.0 543,909 + +1.8 543,909 + -1.3 543,909 + -0.1 543,910 - +1.2 543,910 - -0.2 543,910 - +2.0 543,910 - -2.3 543,910 - +1.0 543,910 - +0.2 543,910 - -0.8 543,910 - +1.0 543,910 - -1.8 543,910 - +0.3 543,913 + +1.2 543,913 + +0.5 543,913 + +1.8 543,913 + -0.3 543,914 - +1.0 543,914 - -1.1 543,923 + -1.1 543,923 + -1.9 543,923 + -1.2 543,924 - +0.0 543,924 - +0.0 543,924 - -0.7 543,962 + +1.2 543,963 - -0.4 543,963 - +0.7 543,963 - -0.3 543,963 - +0.1 543,990 + +0.5 544,056 + +0.1 544,056 + -1.0 544,056 + +1.0 544,056 + +0.4 544,056 + +1.5 544,057 - -0.7 544,057 - -1.4 544,057 - +0.5 544,081 - yjfN MCAODC_02690 0.13 -0.6 544,089 - yjfN MCAODC_02690 0.16 +0.5 544,089 - yjfN MCAODC_02690 0.16 +0.2 544,159 - yjfN MCAODC_02690 0.41 -0.0 544,181 - yjfN MCAODC_02690 0.49 -1.1 544,181 - yjfN MCAODC_02690 0.49 -2.1 544,181 - yjfN MCAODC_02690 0.49 -1.1 544,258 + yjfN MCAODC_02690 0.77 -2.8 544,259 - yjfN MCAODC_02690 0.77 -1.8 544,259 - yjfN MCAODC_02690 0.77 +0.9 544,262 - yjfN MCAODC_02690 0.78 -0.2 544,268 + yjfN MCAODC_02690 0.80 -0.7 544,268 + yjfN MCAODC_02690 0.80 +0.6 544,268 + yjfN MCAODC_02690 0.80 +1.0 544,268 + yjfN MCAODC_02690 0.80 +0.5 544,269 - yjfN MCAODC_02690 0.81 -2.5 544,269 - yjfN MCAODC_02690 0.81 +0.1 544,288 + yjfN MCAODC_02690 0.88 +1.2 544,289 - yjfN MCAODC_02690 0.88 -0.8 544,309 - -1.8 544,313 + -1.7 544,313 + -0.4 544,313 + -1.5 544,313 + +1.0 544,313 + -0.6 544,313 + +1.0 544,314 - -0.5 544,314 - +1.0 544,330 + -2.0 544,331 - -0.0 544,431 + -1.8 544,434 - -1.8 544,439 + +0.3 544,440 - +0.6 544,471 + +1.0 544,471 + +1.0 544,471 + +0.6 544,471 + +0.0 544,472 - +2.0 544,472 - -1.0 544,516 - +0.6 544,516 - -0.7 544,519 + +0.2 544,519 + -2.0 544,519 + +0.1 544,520 - -1.5 544,520 - +3.0 544,562 + +0.2 544,563 - +3.0 544,563 - -0.5 544,563 - +0.4 544,597 + -0.8 544,597 + -1.0 544,598 - -0.7 544,598 - +0.5 544,608 + aidB MCAODC_02695 0.10 +0.5 544,609 - aidB MCAODC_02695 0.11 -1.7 544,638 + aidB MCAODC_02695 0.12 -0.5 544,638 + aidB MCAODC_02695 0.12 +0.8 544,639 - aidB MCAODC_02695 0.12 -0.2 544,720 + aidB MCAODC_02695 0.17 +1.5 544,728 - aidB MCAODC_02695 0.18 +0.8 544,773 + aidB MCAODC_02695 0.21 -0.4 544,773 + aidB MCAODC_02695 0.21 -0.8 544,773 + aidB MCAODC_02695 0.21 -0.4 544,773 + aidB MCAODC_02695 0.21 +1.4 544,773 + aidB MCAODC_02695 0.21 -1.1 544,773 + aidB MCAODC_02695 0.21 -2.4 544,773 + aidB MCAODC_02695 0.21 +0.3 544,773 + aidB MCAODC_02695 0.21 -1.1 544,773 + aidB MCAODC_02695 0.21 +1.8 544,773 + aidB MCAODC_02695 0.21 +0.4 544,773 + aidB MCAODC_02695 0.21 -0.7 544,773 + aidB MCAODC_02695 0.21 -1.2 544,774 - aidB MCAODC_02695 0.21 -1.3 544,774 - aidB MCAODC_02695 0.21 -0.2 544,774 - aidB MCAODC_02695 0.21 -0.6 544,776 + aidB MCAODC_02695 0.21 -2.5 544,797 + aidB MCAODC_02695 0.22 -1.1 544,797 + aidB MCAODC_02695 0.22 +1.0 544,797 + aidB MCAODC_02695 0.22 +0.3 544,896 + aidB MCAODC_02695 0.28 -0.5 544,896 + aidB MCAODC_02695 0.28 -0.8 544,897 - aidB MCAODC_02695 0.28 -0.3
Or see this region's nucleotide sequence