Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ytfK and ytfJ are separated by 324 nucleotides ytfJ and ytfI are separated by 62 nucleotides ytfI and cysQ are separated by 211 nucleotides
MCAODC_02535: ytfK - Uncharacterized protein YtfK, at 518,809 to 519,015
ytfK
MCAODC_02540: ytfJ - Uncharacterized protein YtfJ, at 519,340 to 519,894
ytfJ
MCAODC_02545: ytfI - Uncharacterized protein YtfI, at 519,957 to 520,895
ytfI
MCAODC_02550: cysQ - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 521,107 to 521,847
cysQ
Position (kb) 519
520
521 Strain fitness (log2 ratio) -2
-1
0
1
2 at 518.968 kb on + strand, within ytfK at 518.969 kb on - strand, within ytfK at 518.970 kb on + strand, within ytfK at 518.997 kb on - strand at 519.019 kb on + strand at 519.019 kb on + strand at 519.020 kb on - strand at 519.020 kb on - strand at 519.033 kb on + strand at 519.033 kb on + strand at 519.034 kb on - strand at 519.036 kb on + strand at 519.036 kb on + strand at 519.036 kb on + strand at 519.037 kb on - strand at 519.067 kb on + strand at 519.067 kb on + strand at 519.067 kb on + strand at 519.067 kb on + strand at 519.068 kb on - strand at 519.068 kb on - strand at 519.070 kb on + strand at 519.101 kb on - strand at 519.101 kb on - strand at 519.101 kb on - strand at 519.102 kb on + strand at 519.102 kb on + strand at 519.102 kb on + strand at 519.102 kb on + strand at 519.102 kb on + strand at 519.103 kb on - strand at 519.103 kb on - strand at 519.103 kb on - strand at 519.132 kb on - strand at 519.132 kb on - strand at 519.147 kb on + strand at 519.198 kb on + strand at 519.201 kb on - strand at 519.201 kb on - strand at 519.273 kb on + strand at 519.273 kb on + strand at 519.274 kb on - strand at 519.274 kb on - strand at 519.280 kb on + strand at 519.280 kb on + strand at 519.280 kb on + strand at 519.280 kb on + strand at 519.280 kb on + strand at 519.281 kb on - strand at 519.286 kb on + strand at 519.287 kb on - strand at 519.321 kb on - strand at 519.321 kb on - strand at 519.321 kb on - strand at 519.325 kb on + strand at 519.326 kb on - strand at 519.326 kb on - strand at 519.480 kb on + strand, within ytfJ at 519.481 kb on - strand, within ytfJ at 519.481 kb on - strand, within ytfJ at 519.485 kb on - strand, within ytfJ at 519.537 kb on + strand, within ytfJ at 519.538 kb on - strand, within ytfJ at 519.538 kb on - strand, within ytfJ at 519.538 kb on - strand, within ytfJ at 519.538 kb on - strand, within ytfJ at 519.538 kb on - strand, within ytfJ at 519.538 kb on - strand, within ytfJ at 519.538 kb on - strand, within ytfJ at 519.697 kb on - strand, within ytfJ at 519.699 kb on + strand, within ytfJ at 519.700 kb on - strand, within ytfJ at 519.709 kb on + strand, within ytfJ at 519.726 kb on + strand, within ytfJ at 519.958 kb on + strand at 519.984 kb on + strand at 519.988 kb on - strand at 519.999 kb on + strand at 520.065 kb on - strand, within ytfI at 520.065 kb on - strand, within ytfI at 520.070 kb on + strand, within ytfI at 520.071 kb on - strand, within ytfI at 520.161 kb on - strand, within ytfI at 520.296 kb on - strand, within ytfI at 520.296 kb on - strand, within ytfI at 520.359 kb on + strand, within ytfI at 520.372 kb on - strand, within ytfI at 520.391 kb on - strand, within ytfI at 520.483 kb on + strand, within ytfI at 520.542 kb on - strand, within ytfI at 520.542 kb on - strand, within ytfI at 520.574 kb on - strand, within ytfI at 520.662 kb on - strand, within ytfI at 520.907 kb on - strand at 520.987 kb on + strand at 521.084 kb on + strand at 521.108 kb on + strand at 521.115 kb on + strand at 521.116 kb on - strand at 521.159 kb on + strand at 521.160 kb on - strand at 521.477 kb on + strand, within cysQ at 521.482 kb on + strand, within cysQ at 521.482 kb on + strand, within cysQ at 521.482 kb on + strand, within cysQ at 521.482 kb on + strand, within cysQ at 521.482 kb on + strand, within cysQ at 521.482 kb on + strand, within cysQ at 521.483 kb on - strand, within cysQ at 521.483 kb on - strand, within cysQ at 521.483 kb on - strand, within cysQ at 521.483 kb on - strand, within cysQ at 521.483 kb on - strand, within cysQ at 521.483 kb on - strand, within cysQ at 521.501 kb on + strand, within cysQ at 521.513 kb on - strand, within cysQ at 521.513 kb on - strand, within cysQ at 521.571 kb on + strand, within cysQ at 521.602 kb on + strand, within cysQ at 521.603 kb on - strand, within cysQ at 521.603 kb on - strand, within cysQ at 521.603 kb on - strand, within cysQ at 521.603 kb on - strand, within cysQ at 521.603 kb on - strand, within cysQ at 521.688 kb on + strand, within cysQ at 521.688 kb on + strand, within cysQ at 521.692 kb on + strand, within cysQ at 521.692 kb on + strand, within cysQ at 521.693 kb on - strand, within cysQ at 521.693 kb on - strand, within cysQ at 521.789 kb on + strand at 521.799 kb on + strand at 521.799 kb on + strand at 521.800 kb on - strand at 521.800 kb on - strand at 521.833 kb on + strand at 521.834 kb on - strand at 521.834 kb on - strand at 521.834 kb on - strand at 521.834 kb on - strand at 521.889 kb on + strand at 521.890 kb on - strand at 521.894 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 518,968 + ytfK MCAODC_02535 0.77 +0.4 518,969 - ytfK MCAODC_02535 0.77 +0.8 518,970 + ytfK MCAODC_02535 0.78 -0.7 518,997 - -0.8 519,019 + -1.1 519,019 + -0.3 519,020 - +0.4 519,020 - -2.3 519,033 + +2.0 519,033 + +0.5 519,034 - -0.4 519,036 + +0.6 519,036 + +0.9 519,036 + +0.0 519,037 - +1.8 519,067 + -0.8 519,067 + +1.2 519,067 + -0.1 519,067 + +0.8 519,068 - -0.2 519,068 - -0.1 519,070 + -0.6 519,101 - +2.4 519,101 - -1.8 519,101 - -0.4 519,102 + -0.4 519,102 + -1.4 519,102 + +0.6 519,102 + -0.7 519,102 + +1.0 519,103 - -1.3 519,103 - +0.4 519,103 - -0.6 519,132 - +0.5 519,132 - +1.0 519,147 + -0.0 519,198 + -1.7 519,201 - +2.0 519,201 - -0.1 519,273 + -1.6 519,273 + -0.2 519,274 - +1.1 519,274 - -0.9 519,280 + -0.8 519,280 + +0.5 519,280 + -0.5 519,280 + -0.5 519,280 + +0.1 519,281 - -0.5 519,286 + -0.8 519,287 - -1.0 519,321 - +0.3 519,321 - -1.0 519,321 - +0.6 519,325 + +0.9 519,326 - +0.7 519,326 - -1.3 519,480 + ytfJ MCAODC_02540 0.25 +1.4 519,481 - ytfJ MCAODC_02540 0.25 -0.4 519,481 - ytfJ MCAODC_02540 0.25 -1.9 519,485 - ytfJ MCAODC_02540 0.26 +1.6 519,537 + ytfJ MCAODC_02540 0.35 -0.9 519,538 - ytfJ MCAODC_02540 0.36 -0.8 519,538 - ytfJ MCAODC_02540 0.36 -0.3 519,538 - ytfJ MCAODC_02540 0.36 +1.1 519,538 - ytfJ MCAODC_02540 0.36 +0.2 519,538 - ytfJ MCAODC_02540 0.36 -0.1 519,538 - ytfJ MCAODC_02540 0.36 +1.3 519,538 - ytfJ MCAODC_02540 0.36 -2.0 519,697 - ytfJ MCAODC_02540 0.64 +0.7 519,699 + ytfJ MCAODC_02540 0.65 +0.4 519,700 - ytfJ MCAODC_02540 0.65 -0.5 519,709 + ytfJ MCAODC_02540 0.66 +0.8 519,726 + ytfJ MCAODC_02540 0.70 +1.1 519,958 + +0.7 519,984 + -1.6 519,988 - -1.4 519,999 + +0.2 520,065 - ytfI MCAODC_02545 0.12 +1.4 520,065 - ytfI MCAODC_02545 0.12 -0.1 520,070 + ytfI MCAODC_02545 0.12 +0.3 520,071 - ytfI MCAODC_02545 0.12 -0.4 520,161 - ytfI MCAODC_02545 0.22 +1.0 520,296 - ytfI MCAODC_02545 0.36 +0.8 520,296 - ytfI MCAODC_02545 0.36 +0.0 520,359 + ytfI MCAODC_02545 0.43 +0.5 520,372 - ytfI MCAODC_02545 0.44 +0.1 520,391 - ytfI MCAODC_02545 0.46 +0.1 520,483 + ytfI MCAODC_02545 0.56 +0.1 520,542 - ytfI MCAODC_02545 0.62 -1.2 520,542 - ytfI MCAODC_02545 0.62 -0.6 520,574 - ytfI MCAODC_02545 0.66 +0.2 520,662 - ytfI MCAODC_02545 0.75 -0.7 520,907 - -0.2 520,987 + -0.9 521,084 + -0.1 521,108 + +0.4 521,115 + -1.3 521,116 - -0.3 521,159 + +0.1 521,160 - +0.3 521,477 + cysQ MCAODC_02550 0.50 -0.1 521,482 + cysQ MCAODC_02550 0.51 -0.8 521,482 + cysQ MCAODC_02550 0.51 +1.5 521,482 + cysQ MCAODC_02550 0.51 -1.8 521,482 + cysQ MCAODC_02550 0.51 +0.5 521,482 + cysQ MCAODC_02550 0.51 +0.1 521,482 + cysQ MCAODC_02550 0.51 +0.1 521,483 - cysQ MCAODC_02550 0.51 -1.9 521,483 - cysQ MCAODC_02550 0.51 -0.2 521,483 - cysQ MCAODC_02550 0.51 +1.5 521,483 - cysQ MCAODC_02550 0.51 +1.1 521,483 - cysQ MCAODC_02550 0.51 +0.1 521,483 - cysQ MCAODC_02550 0.51 -0.6 521,501 + cysQ MCAODC_02550 0.53 -0.8 521,513 - cysQ MCAODC_02550 0.55 +0.1 521,513 - cysQ MCAODC_02550 0.55 +0.0 521,571 + cysQ MCAODC_02550 0.63 +1.5 521,602 + cysQ MCAODC_02550 0.67 +1.9 521,603 - cysQ MCAODC_02550 0.67 -1.1 521,603 - cysQ MCAODC_02550 0.67 -0.4 521,603 - cysQ MCAODC_02550 0.67 +1.3 521,603 - cysQ MCAODC_02550 0.67 -1.2 521,603 - cysQ MCAODC_02550 0.67 -2.0 521,688 + cysQ MCAODC_02550 0.78 +0.8 521,688 + cysQ MCAODC_02550 0.78 +1.3 521,692 + cysQ MCAODC_02550 0.79 +0.3 521,692 + cysQ MCAODC_02550 0.79 -0.4 521,693 - cysQ MCAODC_02550 0.79 +0.4 521,693 - cysQ MCAODC_02550 0.79 +0.1 521,789 + -1.6 521,799 + +1.6 521,799 + +0.4 521,800 - +0.1 521,800 - +2.1 521,833 + -0.6 521,834 - +0.2 521,834 - +0.3 521,834 - -1.4 521,834 - +0.3 521,889 + -0.5 521,890 - -1.6 521,894 - -0.4
Or see this region's nucleotide sequence