Strain Fitness in Escherichia coli ECRC101 around MCAODC_00340

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyafF and MCAODC_00340 are separated by 745 nucleotidesMCAODC_00340 and MCAODC_00345 are separated by 68 nucleotides MCAODC_00335: yafF - ISAs1 family transposase, at 40,806 to 41,942 yafF MCAODC_00340: MCAODC_00340 - sel1 repeat family protein, at 42,688 to 43,275 _00340 MCAODC_00345: MCAODC_00345 - RHS repeat protein, at 43,344 to 44,876 _00345 Position (kb) 42 43 44Strain fitness (log2 ratio) -2 -1 0 1 2at 41.709 kb on + strand, within yafFat 41.805 kb on - strand, within yafFat 41.871 kb on - strandat 41.984 kb on - strandat 42.125 kb on + strandat 42.402 kb on + strandat 42.406 kb on + strandat 42.407 kb on - strandat 42.433 kb on + strandat 42.433 kb on + strandat 42.466 kb on - strandat 42.466 kb on - strandat 42.470 kb on - strandat 42.470 kb on - strandat 42.470 kb on - strandat 42.690 kb on - strandat 42.914 kb on - strand, within MCAODC_00340at 42.917 kb on + strand, within MCAODC_00340at 42.918 kb on - strand, within MCAODC_00340at 42.949 kb on - strand, within MCAODC_00340at 42.952 kb on - strand, within MCAODC_00340at 42.993 kb on - strand, within MCAODC_00340at 43.007 kb on + strand, within MCAODC_00340at 43.073 kb on - strand, within MCAODC_00340at 43.091 kb on + strand, within MCAODC_00340at 43.103 kb on - strand, within MCAODC_00340at 43.103 kb on - strand, within MCAODC_00340at 43.103 kb on - strand, within MCAODC_00340at 43.270 kb on - strandat 43.296 kb on + strandat 43.299 kb on - strandat 43.329 kb on + strandat 43.330 kb on - strandat 43.346 kb on - strandat 43.365 kb on - strandat 43.463 kb on + strandat 43.463 kb on + strandat 43.463 kb on + strandat 43.463 kb on + strandat 43.463 kb on + strandat 43.464 kb on - strandat 43.468 kb on + strandat 43.495 kb on - strandat 43.495 kb on - strandat 43.518 kb on - strand, within MCAODC_00345at 43.533 kb on - strand, within MCAODC_00345at 43.536 kb on + strand, within MCAODC_00345at 43.536 kb on + strand, within MCAODC_00345at 43.598 kb on + strand, within MCAODC_00345at 43.599 kb on - strand, within MCAODC_00345at 43.648 kb on - strand, within MCAODC_00345at 43.688 kb on + strand, within MCAODC_00345at 43.688 kb on + strand, within MCAODC_00345at 43.688 kb on + strand, within MCAODC_00345at 43.689 kb on - strand, within MCAODC_00345at 43.740 kb on + strand, within MCAODC_00345at 43.741 kb on - strand, within MCAODC_00345at 43.759 kb on + strand, within MCAODC_00345at 43.760 kb on - strand, within MCAODC_00345at 43.760 kb on - strand, within MCAODC_00345at 43.760 kb on - strand, within MCAODC_00345at 43.762 kb on - strand, within MCAODC_00345at 43.763 kb on + strand, within MCAODC_00345at 43.815 kb on + strand, within MCAODC_00345at 43.816 kb on - strand, within MCAODC_00345at 43.817 kb on + strand, within MCAODC_00345at 43.817 kb on + strand, within MCAODC_00345at 43.817 kb on + strand, within MCAODC_00345at 43.818 kb on - strand, within MCAODC_00345at 43.846 kb on + strand, within MCAODC_00345at 43.847 kb on - strand, within MCAODC_00345at 43.889 kb on + strand, within MCAODC_00345at 43.889 kb on + strand, within MCAODC_00345at 43.889 kb on + strand, within MCAODC_00345at 43.889 kb on + strand, within MCAODC_00345at 43.889 kb on + strand, within MCAODC_00345at 43.889 kb on + strand, within MCAODC_00345at 43.889 kb on + strand, within MCAODC_00345at 43.891 kb on + strand, within MCAODC_00345at 43.891 kb on + strand, within MCAODC_00345at 43.891 kb on + strand, within MCAODC_00345at 43.891 kb on + strand, within MCAODC_00345at 43.891 kb on + strand, within MCAODC_00345at 43.891 kb on + strand, within MCAODC_00345at 43.891 kb on + strand, within MCAODC_00345at 43.891 kb on + strand, within MCAODC_00345at 43.912 kb on + strand, within MCAODC_00345at 43.912 kb on + strand, within MCAODC_00345at 43.912 kb on + strand, within MCAODC_00345at 43.912 kb on + strand, within MCAODC_00345at 43.913 kb on - strand, within MCAODC_00345at 43.913 kb on - strand, within MCAODC_00345at 43.913 kb on - strand, within MCAODC_00345at 43.916 kb on - strand, within MCAODC_00345at 43.930 kb on + strand, within MCAODC_00345at 43.930 kb on + strand, within MCAODC_00345at 43.931 kb on - strand, within MCAODC_00345at 43.931 kb on - strand, within MCAODC_00345at 43.931 kb on - strand, within MCAODC_00345at 43.934 kb on - strand, within MCAODC_00345at 43.934 kb on - strand, within MCAODC_00345at 43.954 kb on + strand, within MCAODC_00345at 43.954 kb on + strand, within MCAODC_00345at 44.132 kb on - strand, within MCAODC_00345

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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41,709 + yafF MCAODC_00335 0.79 -0.4
41,805 - yafF MCAODC_00335 0.88 +1.0
41,871 - -1.2
41,984 - +1.2
42,125 + +0.1
42,402 + -0.9
42,406 + -0.4
42,407 - -1.4
42,433 + +1.1
42,433 + -0.6
42,466 - +0.8
42,466 - +0.4
42,470 - -1.9
42,470 - -0.7
42,470 - -1.3
42,690 - -0.4
42,914 - MCAODC_00340 0.38 +1.7
42,917 + MCAODC_00340 0.39 +0.5
42,918 - MCAODC_00340 0.39 +0.7
42,949 - MCAODC_00340 0.44 -0.3
42,952 - MCAODC_00340 0.45 -0.7
42,993 - MCAODC_00340 0.52 -1.2
43,007 + MCAODC_00340 0.54 +1.4
43,073 - MCAODC_00340 0.65 -1.3
43,091 + MCAODC_00340 0.69 -1.2
43,103 - MCAODC_00340 0.71 -1.5
43,103 - MCAODC_00340 0.71 -0.0
43,103 - MCAODC_00340 0.71 +1.7
43,270 - -0.5
43,296 + +0.2
43,299 - +1.6
43,329 + +0.2
43,330 - +0.5
43,346 - +0.8
43,365 - -0.6
43,463 + -0.0
43,463 + +0.1
43,463 + -0.8
43,463 + -0.1
43,463 + -1.1
43,464 - -0.7
43,468 + +0.4
43,495 - +0.4
43,495 - +2.0
43,518 - MCAODC_00345 0.11 -0.6
43,533 - MCAODC_00345 0.12 -0.0
43,536 + MCAODC_00345 0.13 -0.4
43,536 + MCAODC_00345 0.13 -0.4
43,598 + MCAODC_00345 0.17 -1.7
43,599 - MCAODC_00345 0.17 +1.0
43,648 - MCAODC_00345 0.20 -0.0
43,688 + MCAODC_00345 0.22 -1.7
43,688 + MCAODC_00345 0.22 +0.3
43,688 + MCAODC_00345 0.22 -0.1
43,689 - MCAODC_00345 0.23 -1.2
43,740 + MCAODC_00345 0.26 +1.4
43,741 - MCAODC_00345 0.26 -0.4
43,759 + MCAODC_00345 0.27 -1.0
43,760 - MCAODC_00345 0.27 -0.8
43,760 - MCAODC_00345 0.27 -1.4
43,760 - MCAODC_00345 0.27 -1.4
43,762 - MCAODC_00345 0.27 -0.9
43,763 + MCAODC_00345 0.27 -0.6
43,815 + MCAODC_00345 0.31 -0.0
43,816 - MCAODC_00345 0.31 -0.4
43,817 + MCAODC_00345 0.31 -1.7
43,817 + MCAODC_00345 0.31 +0.8
43,817 + MCAODC_00345 0.31 -0.8
43,818 - MCAODC_00345 0.31 +2.7
43,846 + MCAODC_00345 0.33 +1.0
43,847 - MCAODC_00345 0.33 -0.4
43,889 + MCAODC_00345 0.36 -1.0
43,889 + MCAODC_00345 0.36 +0.4
43,889 + MCAODC_00345 0.36 -0.6
43,889 + MCAODC_00345 0.36 -0.6
43,889 + MCAODC_00345 0.36 +0.6
43,889 + MCAODC_00345 0.36 -1.2
43,889 + MCAODC_00345 0.36 +0.5
43,891 + MCAODC_00345 0.36 -0.8
43,891 + MCAODC_00345 0.36 +2.0
43,891 + MCAODC_00345 0.36 -1.6
43,891 + MCAODC_00345 0.36 -0.6
43,891 + MCAODC_00345 0.36 +0.1
43,891 + MCAODC_00345 0.36 +0.4
43,891 + MCAODC_00345 0.36 +2.0
43,891 + MCAODC_00345 0.36 -1.8
43,912 + MCAODC_00345 0.37 -0.0
43,912 + MCAODC_00345 0.37 +1.1
43,912 + MCAODC_00345 0.37 -0.6
43,912 + MCAODC_00345 0.37 -1.5
43,913 - MCAODC_00345 0.37 -0.0
43,913 - MCAODC_00345 0.37 +1.0
43,913 - MCAODC_00345 0.37 -0.1
43,916 - MCAODC_00345 0.37 +0.2
43,930 + MCAODC_00345 0.38 +0.4
43,930 + MCAODC_00345 0.38 +0.2
43,931 - MCAODC_00345 0.38 +1.0
43,931 - MCAODC_00345 0.38 -0.0
43,931 - MCAODC_00345 0.38 +0.2
43,934 - MCAODC_00345 0.38 -0.8
43,934 - MCAODC_00345 0.38 -0.6
43,954 + MCAODC_00345 0.40 -1.0
43,954 + MCAODC_00345 0.40 -0.2
44,132 - MCAODC_00345 0.51 -1.2

Or see this region's nucleotide sequence