Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF93 and GFF94 overlap by 4 nucleotides GFF94 and GFF95 are separated by 16 nucleotides GFF95 and GFF96 are separated by 155 nucleotides
GFF93 - Cytochrome B561, at 103,226 to 103,669
GFF93
GFF94 - Probable signal peptide protein, at 103,666 to 104,229
GFF94
GFF95 - Probable signal peptide protein, at 104,246 to 104,803
GFF95
GFF96 - Outer membrane porin protein 32 precursor, at 104,959 to 105,999
GFF96
Position (kb) 104
105 Strain fitness (log2 ratio) -2
-1
0
1 at 103.250 kb on + strand at 103.251 kb on - strand at 103.251 kb on - strand at 103.251 kb on - strand at 103.394 kb on + strand, within GFF93 at 103.394 kb on + strand, within GFF93 at 103.395 kb on - strand, within GFF93 at 103.434 kb on - strand, within GFF93 at 104.008 kb on + strand, within GFF94 at 104.228 kb on - strand at 104.309 kb on + strand, within GFF95 at 104.309 kb on + strand, within GFF95 at 104.309 kb on + strand, within GFF95 at 104.309 kb on + strand, within GFF95 at 104.309 kb on + strand, within GFF95 at 104.309 kb on + strand, within GFF95 at 104.309 kb on + strand, within GFF95 at 104.309 kb on + strand, within GFF95 at 104.442 kb on + strand, within GFF95 at 104.657 kb on + strand, within GFF95 at 104.657 kb on + strand, within GFF95 at 104.657 kb on + strand, within GFF95 at 104.658 kb on - strand, within GFF95 at 105.083 kb on + strand, within GFF96 at 105.117 kb on - strand, within GFF96 at 105.270 kb on - strand, within GFF96 at 105.272 kb on + strand, within GFF96 at 105.273 kb on - strand, within GFF96 at 105.306 kb on - strand, within GFF96 at 105.306 kb on - strand, within GFF96 at 105.363 kb on - strand, within GFF96 at 105.395 kb on + strand, within GFF96 at 105.465 kb on - strand, within GFF96 at 105.494 kb on + strand, within GFF96 at 105.635 kb on + strand, within GFF96 at 105.636 kb on - strand, within GFF96
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 103,250 + -0.0 103,251 - +1.0 103,251 - -0.6 103,251 - -0.0 103,394 + GFF93 0.38 -0.1 103,394 + GFF93 0.38 +0.1 103,395 - GFF93 0.38 -0.7 103,434 - GFF93 0.47 +1.5 104,008 + GFF94 0.61 -0.1 104,228 - -0.5 104,309 + GFF95 0.11 -1.1 104,309 + GFF95 0.11 -0.6 104,309 + GFF95 0.11 -0.4 104,309 + GFF95 0.11 +0.7 104,309 + GFF95 0.11 -0.5 104,309 + GFF95 0.11 +1.5 104,309 + GFF95 0.11 -0.5 104,309 + GFF95 0.11 -0.0 104,442 + GFF95 0.35 +0.3 104,657 + GFF95 0.74 +0.6 104,657 + GFF95 0.74 +0.4 104,657 + GFF95 0.74 +0.7 104,658 - GFF95 0.74 -0.0 105,083 + GFF96 0.12 +0.5 105,117 - GFF96 0.15 -0.5 105,270 - GFF96 0.30 -0.1 105,272 + GFF96 0.30 +0.2 105,273 - GFF96 0.30 +1.2 105,306 - GFF96 0.33 +1.0 105,306 - GFF96 0.33 -2.1 105,363 - GFF96 0.39 +0.4 105,395 + GFF96 0.42 +1.3 105,465 - GFF96 0.49 +0.6 105,494 + GFF96 0.51 -0.5 105,635 + GFF96 0.65 +0.7 105,636 - GFF96 0.65 +0.5
Or see this region's nucleotide sequence