Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF947

Experiment: Ying_Nucleobase14 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF946 and GFF947 are separated by 43 nucleotidesGFF947 and GFF948 are separated by 55 nucleotides GFF946 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 679,702 to 681,171 GFF946 GFF947 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 681,215 to 682,423 GFF947 GFF948 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 682,479 to 683,681 GFF948 Position (kb) 681 682 683Strain fitness (log2 ratio) -2 -1 0 1 2at 680.236 kb on + strand, within GFF946at 680.237 kb on - strand, within GFF946at 680.343 kb on - strand, within GFF946at 680.343 kb on - strand, within GFF946at 680.372 kb on + strand, within GFF946at 680.373 kb on - strand, within GFF946at 680.413 kb on - strand, within GFF946at 680.570 kb on + strand, within GFF946at 680.571 kb on - strand, within GFF946at 680.571 kb on - strand, within GFF946at 680.993 kb on + strand, within GFF946at 681.187 kb on + strandat 681.450 kb on + strand, within GFF947at 681.450 kb on + strand, within GFF947at 681.450 kb on + strand, within GFF947at 681.450 kb on + strand, within GFF947at 681.451 kb on - strand, within GFF947at 681.501 kb on + strand, within GFF947at 681.501 kb on + strand, within GFF947at 681.501 kb on + strand, within GFF947at 681.502 kb on - strand, within GFF947at 681.567 kb on + strand, within GFF947at 681.567 kb on + strand, within GFF947at 681.567 kb on + strand, within GFF947at 681.568 kb on - strand, within GFF947at 681.582 kb on + strand, within GFF947at 681.811 kb on + strand, within GFF947at 681.879 kb on + strand, within GFF947at 681.879 kb on + strand, within GFF947at 681.880 kb on - strand, within GFF947at 681.957 kb on + strand, within GFF947at 681.957 kb on + strand, within GFF947at 681.958 kb on - strand, within GFF947at 681.958 kb on - strand, within GFF947at 681.958 kb on - strand, within GFF947at 681.958 kb on - strand, within GFF947at 681.977 kb on + strand, within GFF947at 681.978 kb on - strand, within GFF947at 682.030 kb on + strand, within GFF947at 682.030 kb on + strand, within GFF947at 682.030 kb on + strand, within GFF947at 682.164 kb on + strand, within GFF947at 682.164 kb on + strand, within GFF947at 682.164 kb on + strand, within GFF947at 682.164 kb on + strand, within GFF947at 682.238 kb on + strand, within GFF947at 682.372 kb on + strandat 682.373 kb on - strandat 682.410 kb on + strandat 682.411 kb on - strandat 682.480 kb on + strandat 682.481 kb on - strandat 682.707 kb on + strand, within GFF948at 682.707 kb on + strand, within GFF948at 682.708 kb on - strand, within GFF948at 682.708 kb on - strand, within GFF948at 682.708 kb on - strand, within GFF948at 682.708 kb on - strand, within GFF948at 682.708 kb on - strand, within GFF948at 682.711 kb on + strand, within GFF948at 682.712 kb on - strand, within GFF948at 682.763 kb on - strand, within GFF948at 682.763 kb on - strand, within GFF948at 682.768 kb on + strand, within GFF948at 682.806 kb on + strand, within GFF948at 682.806 kb on + strand, within GFF948at 682.806 kb on + strand, within GFF948at 682.806 kb on + strand, within GFF948at 682.806 kb on + strand, within GFF948at 682.828 kb on + strand, within GFF948at 682.829 kb on - strand, within GFF948at 682.829 kb on - strand, within GFF948at 682.840 kb on + strand, within GFF948at 682.841 kb on - strand, within GFF948at 683.050 kb on + strand, within GFF948at 683.050 kb on + strand, within GFF948at 683.050 kb on + strand, within GFF948at 683.050 kb on + strand, within GFF948at 683.101 kb on + strand, within GFF948at 683.231 kb on + strand, within GFF948at 683.283 kb on - strand, within GFF948

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1
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680,236 + GFF946 0.36 -1.0
680,237 - GFF946 0.36 +0.5
680,343 - GFF946 0.44 -0.6
680,343 - GFF946 0.44 -1.0
680,372 + GFF946 0.46 -1.0
680,373 - GFF946 0.46 +0.4
680,413 - GFF946 0.48 -0.2
680,570 + GFF946 0.59 -0.4
680,571 - GFF946 0.59 -0.1
680,571 - GFF946 0.59 -0.1
680,993 + GFF946 0.88 -0.4
681,187 + -1.8
681,450 + GFF947 0.19 -0.5
681,450 + GFF947 0.19 +0.3
681,450 + GFF947 0.19 +0.6
681,450 + GFF947 0.19 -0.6
681,451 - GFF947 0.20 -0.0
681,501 + GFF947 0.24 -1.6
681,501 + GFF947 0.24 -0.2
681,501 + GFF947 0.24 -1.0
681,502 - GFF947 0.24 -1.7
681,567 + GFF947 0.29 -0.1
681,567 + GFF947 0.29 +0.2
681,567 + GFF947 0.29 +0.3
681,568 - GFF947 0.29 -0.2
681,582 + GFF947 0.30 -0.2
681,811 + GFF947 0.49 +0.6
681,879 + GFF947 0.55 -0.3
681,879 + GFF947 0.55 +0.0
681,880 - GFF947 0.55 +0.3
681,957 + GFF947 0.61 -0.2
681,957 + GFF947 0.61 +0.1
681,958 - GFF947 0.61 -0.1
681,958 - GFF947 0.61 -0.1
681,958 - GFF947 0.61 +0.1
681,958 - GFF947 0.61 +0.1
681,977 + GFF947 0.63 +0.2
681,978 - GFF947 0.63 +0.8
682,030 + GFF947 0.67 +1.2
682,030 + GFF947 0.67 +0.2
682,030 + GFF947 0.67 -0.0
682,164 + GFF947 0.78 +0.3
682,164 + GFF947 0.78 -0.2
682,164 + GFF947 0.78 +1.9
682,164 + GFF947 0.78 +0.2
682,238 + GFF947 0.85 +0.5
682,372 + +0.4
682,373 - -0.3
682,410 + +0.4
682,411 - +1.1
682,480 + -0.2
682,481 - +0.6
682,707 + GFF948 0.19 -0.3
682,707 + GFF948 0.19 +0.6
682,708 - GFF948 0.19 -1.0
682,708 - GFF948 0.19 +0.1
682,708 - GFF948 0.19 +1.7
682,708 - GFF948 0.19 +1.1
682,708 - GFF948 0.19 +0.6
682,711 + GFF948 0.19 -0.3
682,712 - GFF948 0.19 -0.2
682,763 - GFF948 0.24 +0.2
682,763 - GFF948 0.24 -0.8
682,768 + GFF948 0.24 +0.6
682,806 + GFF948 0.27 +0.7
682,806 + GFF948 0.27 +0.1
682,806 + GFF948 0.27 -0.4
682,806 + GFF948 0.27 +0.2
682,806 + GFF948 0.27 -0.6
682,828 + GFF948 0.29 -2.0
682,829 - GFF948 0.29 +1.0
682,829 - GFF948 0.29 +0.1
682,840 + GFF948 0.30 +2.0
682,841 - GFF948 0.30 +0.4
683,050 + GFF948 0.47 -0.3
683,050 + GFF948 0.47 +0.1
683,050 + GFF948 0.47 -0.2
683,050 + GFF948 0.47 +0.5
683,101 + GFF948 0.52 -0.7
683,231 + GFF948 0.63 -0.0
683,283 - GFF948 0.67 +0.1

Or see this region's nucleotide sequence