Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF938 and GFF939 are separated by 69 nucleotides GFF939 and GFF940 overlap by 7 nucleotides GFF940 and GFF941 are separated by 47 nucleotides
GFF938 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 670,978 to 672,030
GFF938
GFF939 - hypothetical protein, at 672,100 to 673,329
GFF939
GFF940 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 673,323 to 674,183
GFF940
GFF941 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 674,231 to 675,331
GFF941
Position (kb) 672
673
674 Strain fitness (log2 ratio) -2
-1
0
1 at 671.115 kb on - strand, within GFF938 at 671.120 kb on + strand, within GFF938 at 671.504 kb on - strand, within GFF938 at 671.504 kb on - strand, within GFF938 at 671.504 kb on - strand, within GFF938 at 671.504 kb on - strand, within GFF938 at 671.705 kb on - strand, within GFF938 at 672.111 kb on + strand at 672.112 kb on - strand at 672.112 kb on - strand at 672.223 kb on + strand, within GFF939 at 672.491 kb on - strand, within GFF939 at 672.541 kb on + strand, within GFF939 at 672.541 kb on + strand, within GFF939 at 672.676 kb on + strand, within GFF939 at 672.676 kb on + strand, within GFF939 at 672.677 kb on - strand, within GFF939 at 672.677 kb on - strand, within GFF939 at 672.904 kb on - strand, within GFF939 at 672.904 kb on - strand, within GFF939 at 672.997 kb on + strand, within GFF939 at 673.320 kb on + strand at 673.320 kb on + strand at 673.321 kb on - strand at 673.402 kb on + strand at 673.422 kb on + strand, within GFF940 at 673.422 kb on + strand, within GFF940 at 673.422 kb on + strand, within GFF940 at 673.422 kb on + strand, within GFF940 at 673.423 kb on - strand, within GFF940 at 673.423 kb on - strand, within GFF940 at 673.511 kb on + strand, within GFF940 at 673.511 kb on + strand, within GFF940 at 673.512 kb on - strand, within GFF940 at 673.512 kb on - strand, within GFF940 at 673.512 kb on - strand, within GFF940 at 673.512 kb on - strand, within GFF940 at 673.512 kb on - strand, within GFF940 at 673.761 kb on + strand, within GFF940 at 673.762 kb on - strand, within GFF940 at 674.017 kb on - strand, within GFF940 at 674.022 kb on + strand, within GFF940 at 674.023 kb on - strand, within GFF940 at 674.023 kb on - strand, within GFF940 at 674.100 kb on + strand at 674.146 kb on + strand at 674.155 kb on - strand at 674.155 kb on - strand at 674.205 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 671,115 - GFF938 0.13 -0.4 671,120 + GFF938 0.13 -0.7 671,504 - GFF938 0.50 -0.0 671,504 - GFF938 0.50 +0.7 671,504 - GFF938 0.50 +0.5 671,504 - GFF938 0.50 -0.2 671,705 - GFF938 0.69 -1.1 672,111 + -0.2 672,112 - +0.3 672,112 - -0.1 672,223 + GFF939 0.10 -0.4 672,491 - GFF939 0.32 -1.9 672,541 + GFF939 0.36 -0.1 672,541 + GFF939 0.36 -0.2 672,676 + GFF939 0.47 -1.1 672,676 + GFF939 0.47 -0.2 672,677 - GFF939 0.47 +0.3 672,677 - GFF939 0.47 -0.2 672,904 - GFF939 0.65 +1.3 672,904 - GFF939 0.65 -1.6 672,997 + GFF939 0.73 +0.2 673,320 + -1.8 673,320 + -1.0 673,321 - -1.2 673,402 + -0.5 673,422 + GFF940 0.11 +1.3 673,422 + GFF940 0.11 +0.5 673,422 + GFF940 0.11 -2.4 673,422 + GFF940 0.11 -1.2 673,423 - GFF940 0.12 -0.0 673,423 - GFF940 0.12 -0.2 673,511 + GFF940 0.22 -0.5 673,511 + GFF940 0.22 -1.6 673,512 - GFF940 0.22 +0.1 673,512 - GFF940 0.22 +0.7 673,512 - GFF940 0.22 -0.4 673,512 - GFF940 0.22 -0.2 673,512 - GFF940 0.22 -0.6 673,761 + GFF940 0.51 -0.8 673,762 - GFF940 0.51 -1.2 674,017 - GFF940 0.81 -0.8 674,022 + GFF940 0.81 -0.4 674,023 - GFF940 0.81 -0.2 674,023 - GFF940 0.81 -0.4 674,100 + -0.2 674,146 + +1.4 674,155 - -0.0 674,155 - -1.0 674,205 + -0.8
Or see this region's nucleotide sequence