Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF897

Experiment: Ying_Nucleobase14 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF896 and GFF897 are separated by 156 nucleotidesGFF897 and GFF898 are separated by 28 nucleotides GFF896 - Response regulator of zinc sigma-54-dependent two-component system, at 624,359 to 626,038 GFF896 GFF897 - Tricarboxylate transport protein TctC, at 626,195 to 627,160 GFF897 GFF898 - Acetyl-CoA acetyltransferase, at 627,189 to 628,370 GFF898 Position (kb) 626 627 628Strain fitness (log2 ratio) -1 0 1 2at 625.342 kb on - strand, within GFF896at 625.371 kb on - strand, within GFF896at 625.371 kb on - strand, within GFF896at 625.380 kb on + strand, within GFF896at 625.380 kb on + strand, within GFF896at 625.380 kb on + strand, within GFF896at 625.380 kb on + strand, within GFF896at 625.380 kb on + strand, within GFF896at 625.381 kb on - strand, within GFF896at 625.500 kb on + strand, within GFF896at 625.500 kb on + strand, within GFF896at 625.501 kb on - strand, within GFF896at 625.501 kb on - strand, within GFF896at 625.501 kb on - strand, within GFF896at 625.501 kb on - strand, within GFF896at 625.501 kb on - strand, within GFF896at 625.501 kb on - strand, within GFF896at 625.501 kb on - strand, within GFF896at 625.635 kb on + strand, within GFF896at 625.635 kb on + strand, within GFF896at 625.635 kb on + strand, within GFF896at 625.635 kb on + strand, within GFF896at 625.635 kb on + strand, within GFF896at 625.635 kb on + strand, within GFF896at 625.635 kb on + strand, within GFF896at 625.636 kb on - strand, within GFF896at 625.636 kb on - strand, within GFF896at 625.693 kb on + strand, within GFF896at 625.693 kb on + strand, within GFF896at 625.693 kb on + strand, within GFF896at 625.694 kb on - strand, within GFF896at 625.694 kb on - strand, within GFF896at 625.694 kb on - strand, within GFF896at 625.694 kb on - strand, within GFF896at 625.731 kb on - strand, within GFF896at 625.731 kb on - strand, within GFF896at 625.731 kb on - strand, within GFF896at 625.731 kb on - strand, within GFF896at 625.778 kb on + strand, within GFF896at 625.778 kb on + strand, within GFF896at 625.778 kb on + strand, within GFF896at 625.778 kb on + strand, within GFF896at 625.779 kb on - strand, within GFF896at 625.779 kb on - strand, within GFF896at 625.779 kb on - strand, within GFF896at 625.779 kb on - strand, within GFF896at 626.038 kb on + strandat 626.039 kb on + strandat 626.039 kb on - strandat 626.039 kb on - strandat 626.061 kb on + strandat 626.061 kb on + strandat 626.061 kb on + strandat 626.062 kb on - strandat 626.119 kb on + strandat 626.119 kb on + strandat 626.119 kb on + strandat 626.119 kb on + strandat 626.119 kb on + strandat 626.119 kb on + strandat 626.119 kb on + strandat 626.119 kb on + strandat 626.119 kb on + strandat 626.119 kb on + strandat 626.119 kb on + strandat 626.119 kb on + strandat 626.119 kb on + strandat 626.120 kb on - strandat 626.120 kb on - strandat 626.120 kb on - strandat 626.120 kb on - strandat 626.120 kb on - strandat 626.120 kb on - strandat 626.120 kb on - strandat 626.120 kb on - strandat 626.120 kb on - strandat 626.120 kb on - strandat 626.120 kb on - strandat 626.120 kb on - strandat 626.120 kb on - strandat 626.169 kb on + strandat 626.169 kb on + strandat 626.170 kb on - strandat 626.170 kb on - strandat 626.193 kb on + strandat 626.194 kb on + strandat 626.194 kb on + strandat 626.194 kb on + strandat 626.195 kb on - strandat 626.195 kb on - strandat 626.195 kb on - strandat 626.195 kb on - strandat 626.195 kb on - strandat 626.195 kb on - strandat 626.195 kb on - strandat 626.195 kb on - strandat 626.196 kb on - strandat 626.303 kb on + strand, within GFF897at 626.303 kb on + strand, within GFF897at 626.303 kb on + strand, within GFF897at 626.304 kb on - strand, within GFF897at 626.436 kb on + strand, within GFF897at 626.436 kb on + strand, within GFF897at 626.558 kb on + strand, within GFF897at 626.558 kb on + strand, within GFF897at 626.558 kb on + strand, within GFF897at 626.559 kb on - strand, within GFF897at 626.559 kb on - strand, within GFF897at 626.610 kb on - strand, within GFF897at 626.647 kb on + strand, within GFF897at 626.647 kb on + strand, within GFF897at 626.647 kb on + strand, within GFF897at 626.647 kb on + strand, within GFF897at 626.647 kb on + strand, within GFF897at 626.647 kb on + strand, within GFF897at 626.648 kb on - strand, within GFF897at 626.648 kb on - strand, within GFF897at 626.648 kb on - strand, within GFF897at 626.648 kb on - strand, within GFF897at 626.651 kb on + strand, within GFF897at 626.651 kb on + strand, within GFF897at 626.651 kb on + strand, within GFF897at 626.651 kb on + strand, within GFF897at 626.651 kb on + strand, within GFF897at 626.651 kb on + strand, within GFF897at 626.651 kb on + strand, within GFF897at 626.652 kb on - strand, within GFF897at 626.652 kb on - strand, within GFF897at 626.652 kb on - strand, within GFF897at 626.652 kb on - strand, within GFF897at 626.652 kb on - strand, within GFF897at 626.652 kb on - strand, within GFF897at 626.928 kb on - strand, within GFF897at 626.928 kb on - strand, within GFF897at 626.928 kb on - strand, within GFF897at 626.928 kb on - strand, within GFF897at 626.962 kb on + strand, within GFF897at 626.962 kb on + strand, within GFF897at 626.963 kb on - strand, within GFF897at 626.963 kb on - strand, within GFF897at 626.963 kb on - strand, within GFF897at 626.963 kb on - strand, within GFF897at 626.963 kb on - strand, within GFF897at 627.050 kb on + strand, within GFF897at 627.050 kb on + strand, within GFF897at 627.051 kb on - strand, within GFF897at 627.083 kb on + strandat 627.083 kb on + strandat 627.083 kb on + strandat 627.084 kb on - strandat 627.107 kb on + strandat 627.378 kb on + strand, within GFF898at 627.378 kb on + strand, within GFF898at 627.379 kb on - strand, within GFF898at 627.393 kb on - strand, within GFF898at 627.402 kb on + strand, within GFF898at 627.403 kb on - strand, within GFF898at 627.403 kb on - strand, within GFF898at 627.403 kb on - strand, within GFF898at 627.639 kb on + strand, within GFF898at 627.660 kb on + strand, within GFF898at 627.661 kb on - strand, within GFF898at 627.661 kb on - strand, within GFF898at 627.751 kb on - strand, within GFF898at 627.751 kb on - strand, within GFF898at 627.816 kb on + strand, within GFF898at 627.817 kb on + strand, within GFF898at 627.817 kb on - strand, within GFF898at 627.817 kb on - strand, within GFF898at 627.946 kb on + strand, within GFF898at 627.947 kb on - strand, within GFF898at 628.008 kb on + strand, within GFF898at 628.008 kb on + strand, within GFF898at 628.056 kb on + strand, within GFF898at 628.056 kb on + strand, within GFF898at 628.056 kb on + strand, within GFF898at 628.057 kb on - strand, within GFF898at 628.057 kb on - strand, within GFF898at 628.057 kb on - strand, within GFF898at 628.057 kb on - strand, within GFF898at 628.057 kb on - strand, within GFF898at 628.057 kb on - strand, within GFF898

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1
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625,342 - GFF896 0.59 +0.4
625,371 - GFF896 0.60 +0.0
625,371 - GFF896 0.60 +0.6
625,380 + GFF896 0.61 -0.2
625,380 + GFF896 0.61 +0.2
625,380 + GFF896 0.61 +0.2
625,380 + GFF896 0.61 -0.4
625,380 + GFF896 0.61 -0.8
625,381 - GFF896 0.61 -0.8
625,500 + GFF896 0.68 -0.1
625,500 + GFF896 0.68 -0.2
625,501 - GFF896 0.68 -0.0
625,501 - GFF896 0.68 +0.1
625,501 - GFF896 0.68 -1.4
625,501 - GFF896 0.68 -0.2
625,501 - GFF896 0.68 +0.2
625,501 - GFF896 0.68 +0.2
625,501 - GFF896 0.68 -1.0
625,635 + GFF896 0.76 -0.7
625,635 + GFF896 0.76 -0.4
625,635 + GFF896 0.76 -0.2
625,635 + GFF896 0.76 +0.3
625,635 + GFF896 0.76 +0.3
625,635 + GFF896 0.76 -0.4
625,635 + GFF896 0.76 -0.6
625,636 - GFF896 0.76 -0.0
625,636 - GFF896 0.76 +0.4
625,693 + GFF896 0.79 +0.3
625,693 + GFF896 0.79 -0.1
625,693 + GFF896 0.79 -0.6
625,694 - GFF896 0.79 +0.6
625,694 - GFF896 0.79 -0.6
625,694 - GFF896 0.79 +0.2
625,694 - GFF896 0.79 -0.7
625,731 - GFF896 0.82 -0.2
625,731 - GFF896 0.82 +0.4
625,731 - GFF896 0.82 +0.4
625,731 - GFF896 0.82 +0.0
625,778 + GFF896 0.84 -0.1
625,778 + GFF896 0.84 +0.8
625,778 + GFF896 0.84 -0.2
625,778 + GFF896 0.84 -0.0
625,779 - GFF896 0.85 -0.5
625,779 - GFF896 0.85 +0.2
625,779 - GFF896 0.85 -0.2
625,779 - GFF896 0.85 +0.7
626,038 + +0.1
626,039 + -0.6
626,039 - -0.4
626,039 - -0.4
626,061 + +0.0
626,061 + +0.1
626,061 + -0.4
626,062 - -0.2
626,119 + +0.2
626,119 + -0.6
626,119 + +0.3
626,119 + +0.4
626,119 + -0.6
626,119 + -0.1
626,119 + +0.0
626,119 + +0.1
626,119 + -0.9
626,119 + -0.3
626,119 + +0.3
626,119 + +0.6
626,119 + -0.7
626,120 - -1.4
626,120 - +1.6
626,120 - -0.3
626,120 - +0.0
626,120 - +0.8
626,120 - -0.1
626,120 - -0.5
626,120 - -0.5
626,120 - +0.8
626,120 - -0.2
626,120 - -0.3
626,120 - +0.1
626,120 - -0.5
626,169 + -0.5
626,169 + +1.8
626,170 - -0.0
626,170 - +0.6
626,193 + -0.2
626,194 + -0.6
626,194 + -0.4
626,194 + -0.4
626,195 - -0.4
626,195 - -1.0
626,195 - -0.1
626,195 - -0.0
626,195 - +0.4
626,195 - -0.6
626,195 - +0.6
626,195 - -0.2
626,196 - -1.6
626,303 + GFF897 0.11 -0.1
626,303 + GFF897 0.11 +0.1
626,303 + GFF897 0.11 -0.0
626,304 - GFF897 0.11 -0.6
626,436 + GFF897 0.25 +0.1
626,436 + GFF897 0.25 -1.3
626,558 + GFF897 0.38 -0.5
626,558 + GFF897 0.38 -0.6
626,558 + GFF897 0.38 -0.1
626,559 - GFF897 0.38 +0.4
626,559 - GFF897 0.38 -0.6
626,610 - GFF897 0.43 -0.6
626,647 + GFF897 0.47 +0.0
626,647 + GFF897 0.47 -0.6
626,647 + GFF897 0.47 -0.2
626,647 + GFF897 0.47 -0.5
626,647 + GFF897 0.47 -0.8
626,647 + GFF897 0.47 -0.2
626,648 - GFF897 0.47 -0.7
626,648 - GFF897 0.47 +1.7
626,648 - GFF897 0.47 +0.8
626,648 - GFF897 0.47 -0.0
626,651 + GFF897 0.47 -0.3
626,651 + GFF897 0.47 +0.3
626,651 + GFF897 0.47 -1.0
626,651 + GFF897 0.47 -0.1
626,651 + GFF897 0.47 -0.3
626,651 + GFF897 0.47 -0.4
626,651 + GFF897 0.47 +0.2
626,652 - GFF897 0.47 -0.3
626,652 - GFF897 0.47 +0.5
626,652 - GFF897 0.47 +0.3
626,652 - GFF897 0.47 -0.2
626,652 - GFF897 0.47 -0.0
626,652 - GFF897 0.47 +0.7
626,928 - GFF897 0.76 +0.2
626,928 - GFF897 0.76 -1.0
626,928 - GFF897 0.76 -0.7
626,928 - GFF897 0.76 +1.0
626,962 + GFF897 0.79 -0.3
626,962 + GFF897 0.79 -0.6
626,963 - GFF897 0.80 +0.0
626,963 - GFF897 0.80 -0.2
626,963 - GFF897 0.80 +1.2
626,963 - GFF897 0.80 +1.3
626,963 - GFF897 0.80 -0.4
627,050 + GFF897 0.89 -1.2
627,050 + GFF897 0.89 -0.1
627,051 - GFF897 0.89 +0.1
627,083 + -0.2
627,083 + +0.0
627,083 + +0.2
627,084 - -0.2
627,107 + +0.0
627,378 + GFF898 0.16 +0.1
627,378 + GFF898 0.16 -0.3
627,379 - GFF898 0.16 +0.0
627,393 - GFF898 0.17 +0.7
627,402 + GFF898 0.18 -0.5
627,403 - GFF898 0.18 +1.4
627,403 - GFF898 0.18 +0.5
627,403 - GFF898 0.18 +0.4
627,639 + GFF898 0.38 -0.3
627,660 + GFF898 0.40 +0.1
627,661 - GFF898 0.40 -0.5
627,661 - GFF898 0.40 +0.5
627,751 - GFF898 0.48 -0.1
627,751 - GFF898 0.48 +0.1
627,816 + GFF898 0.53 -0.6
627,817 + GFF898 0.53 -0.2
627,817 - GFF898 0.53 -0.2
627,817 - GFF898 0.53 -1.4
627,946 + GFF898 0.64 +0.7
627,947 - GFF898 0.64 -0.8
628,008 + GFF898 0.69 -0.8
628,008 + GFF898 0.69 -0.2
628,056 + GFF898 0.73 -0.2
628,056 + GFF898 0.73 +0.6
628,056 + GFF898 0.73 +0.3
628,057 - GFF898 0.73 +0.5
628,057 - GFF898 0.73 -0.6
628,057 - GFF898 0.73 +0.2
628,057 - GFF898 0.73 +0.8
628,057 - GFF898 0.73 +0.8
628,057 - GFF898 0.73 -0.9

Or see this region's nucleotide sequence