Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF878 and GFF879 are separated by 64 nucleotides GFF879 and GFF880 overlap by 1 nucleotides GFF880 and GFF881 are separated by 156 nucleotides
GFF878 - Acyclic terpenes utilization regulator AtuR, TetR family, at 604,139 to 604,648
GFF878
GFF879 - Electron transfer flavoprotein, beta subunit, at 604,713 to 605,462
GFF879
GFF880 - Electron transfer flavoprotein, alpha subunit, at 605,462 to 606,400
GFF880
GFF881 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 606,557 to 608,092
GFF881
Position (kb) 605
606
607 Strain fitness (log2 ratio) -1
0
1
2
3 at 604.598 kb on + strand at 604.598 kb on + strand at 604.599 kb on - strand at 604.599 kb on - strand at 604.673 kb on + strand at 604.709 kb on + strand at 604.720 kb on + strand at 604.720 kb on + strand at 604.721 kb on - strand at 604.749 kb on + strand at 604.749 kb on + strand at 604.749 kb on + strand at 604.750 kb on - strand at 605.007 kb on - strand, within GFF879 at 605.655 kb on + strand, within GFF880 at 605.656 kb on - strand, within GFF880 at 605.656 kb on - strand, within GFF880 at 605.656 kb on - strand, within GFF880 at 605.656 kb on - strand, within GFF880 at 605.720 kb on + strand, within GFF880 at 605.853 kb on - strand, within GFF880 at 605.853 kb on - strand, within GFF880 at 606.230 kb on + strand, within GFF880 at 606.230 kb on + strand, within GFF880 at 606.231 kb on - strand, within GFF880 at 606.344 kb on + strand at 606.398 kb on + strand at 606.398 kb on + strand at 606.399 kb on - strand at 606.399 kb on - strand at 606.641 kb on + strand at 606.642 kb on - strand at 606.642 kb on - strand at 606.642 kb on - strand at 606.726 kb on + strand, within GFF881 at 606.733 kb on + strand, within GFF881 at 606.734 kb on - strand, within GFF881 at 606.734 kb on - strand, within GFF881 at 606.830 kb on + strand, within GFF881 at 606.831 kb on - strand, within GFF881 at 607.049 kb on + strand, within GFF881 at 607.049 kb on + strand, within GFF881 at 607.050 kb on - strand, within GFF881 at 607.050 kb on - strand, within GFF881 at 607.076 kb on - strand, within GFF881 at 607.391 kb on + strand, within GFF881 at 607.392 kb on - strand, within GFF881
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 604,598 + -1.2 604,598 + +1.1 604,599 - +1.0 604,599 - +0.3 604,673 + +0.1 604,709 + -0.0 604,720 + +0.1 604,720 + -0.5 604,721 - +0.5 604,749 + -0.0 604,749 + -0.0 604,749 + -0.8 604,750 - -0.8 605,007 - GFF879 0.39 +0.6 605,655 + GFF880 0.21 +0.0 605,656 - GFF880 0.21 -0.0 605,656 - GFF880 0.21 +0.1 605,656 - GFF880 0.21 -0.4 605,656 - GFF880 0.21 +0.4 605,720 + GFF880 0.27 +0.3 605,853 - GFF880 0.42 +0.6 605,853 - GFF880 0.42 -0.1 606,230 + GFF880 0.82 -0.4 606,230 + GFF880 0.82 +3.0 606,231 - GFF880 0.82 -0.1 606,344 + +0.5 606,398 + -0.5 606,398 + +1.3 606,399 - -0.7 606,399 - -0.2 606,641 + +0.4 606,642 - -0.6 606,642 - +0.2 606,642 - +0.3 606,726 + GFF881 0.11 -0.8 606,733 + GFF881 0.11 +2.0 606,734 - GFF881 0.12 +0.2 606,734 - GFF881 0.12 -0.8 606,830 + GFF881 0.18 -0.2 606,831 - GFF881 0.18 +0.3 607,049 + GFF881 0.32 -0.3 607,049 + GFF881 0.32 +0.3 607,050 - GFF881 0.32 +0.2 607,050 - GFF881 0.32 -0.8 607,076 - GFF881 0.34 +1.8 607,391 + GFF881 0.54 -0.8 607,392 - GFF881 0.54 +0.8
Or see this region's nucleotide sequence