Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF707

Experiment: Ying_Nucleobase14 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF706 and GFF707 are separated by 29 nucleotidesGFF707 and GFF708 are separated by 83 nucleotides GFF706 - Tricarboxylate transport protein TctC, at 385,557 to 386,537 GFF706 GFF707 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like, at 386,567 to 387,601 GFF707 GFF708 - Nucleoside-diphosphate-sugar epimerases, at 387,685 to 388,602 GFF708 Position (kb) 386 387 388Strain fitness (log2 ratio) -2 -1 0 1 2at 385.597 kb on + strandat 385.598 kb on - strandat 385.598 kb on - strandat 385.975 kb on + strand, within GFF706at 385.975 kb on + strand, within GFF706at 385.975 kb on + strand, within GFF706at 385.975 kb on + strand, within GFF706at 385.975 kb on + strand, within GFF706at 385.976 kb on - strand, within GFF706at 385.976 kb on - strand, within GFF706at 386.062 kb on + strand, within GFF706at 386.062 kb on + strand, within GFF706at 386.063 kb on - strand, within GFF706at 386.063 kb on - strand, within GFF706at 386.063 kb on - strand, within GFF706at 386.063 kb on - strand, within GFF706at 386.063 kb on - strand, within GFF706at 386.063 kb on - strand, within GFF706at 386.063 kb on - strand, within GFF706at 386.213 kb on - strand, within GFF706at 386.643 kb on + strandat 386.644 kb on - strandat 386.688 kb on + strand, within GFF707at 386.688 kb on + strand, within GFF707at 386.688 kb on + strand, within GFF707at 386.688 kb on + strand, within GFF707at 386.688 kb on + strand, within GFF707at 386.689 kb on - strand, within GFF707at 386.689 kb on - strand, within GFF707at 386.689 kb on - strand, within GFF707at 386.689 kb on - strand, within GFF707at 386.689 kb on - strand, within GFF707at 386.799 kb on + strand, within GFF707at 386.800 kb on - strand, within GFF707at 386.800 kb on - strand, within GFF707at 386.850 kb on + strand, within GFF707at 386.850 kb on + strand, within GFF707at 386.850 kb on + strand, within GFF707at 386.851 kb on - strand, within GFF707at 386.880 kb on + strand, within GFF707at 387.012 kb on + strand, within GFF707at 387.012 kb on + strand, within GFF707at 387.153 kb on + strand, within GFF707at 387.153 kb on + strand, within GFF707at 387.153 kb on + strand, within GFF707at 387.153 kb on + strand, within GFF707at 387.154 kb on - strand, within GFF707at 387.154 kb on - strand, within GFF707at 387.192 kb on + strand, within GFF707at 387.192 kb on + strand, within GFF707at 387.208 kb on - strand, within GFF707at 387.384 kb on + strand, within GFF707at 387.384 kb on + strand, within GFF707at 387.384 kb on + strand, within GFF707at 387.384 kb on + strand, within GFF707at 387.385 kb on - strand, within GFF707at 387.385 kb on - strand, within GFF707at 387.498 kb on + strandat 387.498 kb on + strandat 387.499 kb on - strandat 387.499 kb on - strandat 387.601 kb on + strandat 387.601 kb on + strandat 387.602 kb on - strandat 387.602 kb on - strandat 387.602 kb on - strandat 387.617 kb on + strandat 387.662 kb on - strandat 387.662 kb on - strandat 388.039 kb on + strand, within GFF708at 388.039 kb on + strand, within GFF708at 388.061 kb on - strand, within GFF708at 388.214 kb on - strand, within GFF708at 388.214 kb on - strand, within GFF708at 388.214 kb on - strand, within GFF708at 388.214 kb on - strand, within GFF708at 388.214 kb on - strand, within GFF708at 388.214 kb on - strand, within GFF708at 388.214 kb on - strand, within GFF708at 388.294 kb on + strand, within GFF708at 388.294 kb on + strand, within GFF708at 388.294 kb on + strand, within GFF708at 388.294 kb on + strand, within GFF708at 388.294 kb on + strand, within GFF708at 388.294 kb on + strand, within GFF708at 388.294 kb on - strand, within GFF708at 388.295 kb on - strand, within GFF708at 388.295 kb on - strand, within GFF708at 388.295 kb on - strand, within GFF708at 388.295 kb on - strand, within GFF708at 388.295 kb on - strand, within GFF708at 388.411 kb on + strand, within GFF708at 388.412 kb on - strand, within GFF708at 388.412 kb on - strand, within GFF708at 388.412 kb on - strand, within GFF708at 388.436 kb on - strand, within GFF708at 388.436 kb on - strand, within GFF708

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1
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385,597 + -0.7
385,598 - +0.7
385,598 - +1.0
385,975 + GFF706 0.43 -1.3
385,975 + GFF706 0.43 +0.3
385,975 + GFF706 0.43 -0.2
385,975 + GFF706 0.43 +0.2
385,975 + GFF706 0.43 +0.2
385,976 - GFF706 0.43 +0.8
385,976 - GFF706 0.43 -0.3
386,062 + GFF706 0.51 -0.8
386,062 + GFF706 0.51 -1.0
386,063 - GFF706 0.52 -1.5
386,063 - GFF706 0.52 +0.3
386,063 - GFF706 0.52 -0.4
386,063 - GFF706 0.52 +0.3
386,063 - GFF706 0.52 +0.1
386,063 - GFF706 0.52 +0.6
386,063 - GFF706 0.52 +0.2
386,213 - GFF706 0.67 -0.1
386,643 + -1.3
386,644 - +0.3
386,688 + GFF707 0.12 -0.0
386,688 + GFF707 0.12 -0.0
386,688 + GFF707 0.12 +0.1
386,688 + GFF707 0.12 +0.4
386,688 + GFF707 0.12 +0.4
386,689 - GFF707 0.12 +0.1
386,689 - GFF707 0.12 +0.1
386,689 - GFF707 0.12 -0.7
386,689 - GFF707 0.12 -0.5
386,689 - GFF707 0.12 -1.0
386,799 + GFF707 0.22 +0.9
386,800 - GFF707 0.23 -0.0
386,800 - GFF707 0.23 -0.1
386,850 + GFF707 0.27 -0.0
386,850 + GFF707 0.27 +0.1
386,850 + GFF707 0.27 +0.1
386,851 - GFF707 0.27 +0.9
386,880 + GFF707 0.30 +0.2
387,012 + GFF707 0.43 -0.1
387,012 + GFF707 0.43 +0.4
387,153 + GFF707 0.57 +1.8
387,153 + GFF707 0.57 +0.1
387,153 + GFF707 0.57 +0.5
387,153 + GFF707 0.57 -0.1
387,154 - GFF707 0.57 +0.3
387,154 - GFF707 0.57 +0.1
387,192 + GFF707 0.60 -0.5
387,192 + GFF707 0.60 +0.3
387,208 - GFF707 0.62 +0.5
387,384 + GFF707 0.79 +0.9
387,384 + GFF707 0.79 +0.3
387,384 + GFF707 0.79 -0.6
387,384 + GFF707 0.79 -0.4
387,385 - GFF707 0.79 +0.2
387,385 - GFF707 0.79 -1.2
387,498 + -0.5
387,498 + -0.2
387,499 - -0.0
387,499 - +0.4
387,601 + -0.5
387,601 + -0.4
387,602 - -2.1
387,602 - -0.1
387,602 - +0.1
387,617 + -0.2
387,662 - +0.6
387,662 - +0.6
388,039 + GFF708 0.39 -0.3
388,039 + GFF708 0.39 +0.4
388,061 - GFF708 0.41 +0.1
388,214 - GFF708 0.58 +0.8
388,214 - GFF708 0.58 +0.7
388,214 - GFF708 0.58 -1.5
388,214 - GFF708 0.58 +0.1
388,214 - GFF708 0.58 -0.3
388,214 - GFF708 0.58 +0.2
388,214 - GFF708 0.58 -0.3
388,294 + GFF708 0.66 +0.1
388,294 + GFF708 0.66 +0.6
388,294 + GFF708 0.66 +0.0
388,294 + GFF708 0.66 -0.3
388,294 + GFF708 0.66 +1.3
388,294 + GFF708 0.66 +0.3
388,294 - GFF708 0.66 +0.4
388,295 - GFF708 0.66 -0.1
388,295 - GFF708 0.66 +1.0
388,295 - GFF708 0.66 +0.6
388,295 - GFF708 0.66 +0.0
388,295 - GFF708 0.66 -0.6
388,411 + GFF708 0.79 +0.4
388,412 - GFF708 0.79 +0.5
388,412 - GFF708 0.79 -0.8
388,412 - GFF708 0.79 -0.2
388,436 - GFF708 0.82 +0.3
388,436 - GFF708 0.82 -0.9

Or see this region's nucleotide sequence