Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF648 and GFF649 overlap by 4 nucleotides GFF649 and GFF650 overlap by 4 nucleotides GFF650 and GFF651 are separated by 2 nucleotides GFF651 and GFF652 are separated by 4 nucleotides
GFF648 - UPF0301 protein YqgE, at 330,241 to 330,828
GFF648
GFF649 - Putative Holliday junction resolvase YggF, at 330,825 to 331,253
GFF649
GFF650 - Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR, at 331,250 to 331,774
GFF650
GFF651 - Aspartate carbamoyltransferase (EC 2.1.3.2), at 331,777 to 332,736
GFF651
GFF652 - Dihydroorotase (EC 3.5.2.3), at 332,741 to 334,066
GFF652
Position (kb) 331
332 Strain fitness (log2 ratio) -2
-1
0
1
2 at 330.541 kb on + strand, within GFF648 at 330.541 kb on + strand, within GFF648 at 330.541 kb on + strand, within GFF648 at 330.541 kb on + strand, within GFF648 at 330.542 kb on - strand, within GFF648 at 330.542 kb on - strand, within GFF648 at 330.542 kb on - strand, within GFF648 at 330.542 kb on - strand, within GFF648 at 330.542 kb on - strand, within GFF648 at 330.652 kb on + strand, within GFF648 at 330.653 kb on - strand, within GFF648 at 330.653 kb on - strand, within GFF648 at 331.550 kb on + strand, within GFF650 at 331.550 kb on + strand, within GFF650 at 331.550 kb on + strand, within GFF650 at 331.551 kb on - strand, within GFF650 at 331.595 kb on + strand, within GFF650 at 332.150 kb on - strand, within GFF651 at 332.242 kb on + strand, within GFF651 at 332.242 kb on + strand, within GFF651 at 332.242 kb on + strand, within GFF651 at 332.242 kb on + strand, within GFF651 at 332.242 kb on + strand, within GFF651 at 332.242 kb on + strand, within GFF651 at 332.242 kb on + strand, within GFF651 at 332.243 kb on - strand, within GFF651 at 332.243 kb on - strand, within GFF651 at 332.258 kb on - strand, within GFF651 at 332.530 kb on + strand, within GFF651 at 332.530 kb on + strand, within GFF651 at 332.530 kb on + strand, within GFF651 at 332.531 kb on - strand, within GFF651 at 332.680 kb on + strand at 332.680 kb on + strand at 332.681 kb on - strand at 332.734 kb on + strand at 332.734 kb on + strand at 332.735 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 330,541 + GFF648 0.51 -0.4 330,541 + GFF648 0.51 +0.3 330,541 + GFF648 0.51 +0.6 330,541 + GFF648 0.51 +0.2 330,542 - GFF648 0.51 -0.1 330,542 - GFF648 0.51 +0.7 330,542 - GFF648 0.51 -0.1 330,542 - GFF648 0.51 +0.3 330,542 - GFF648 0.51 -0.7 330,652 + GFF648 0.70 -0.1 330,653 - GFF648 0.70 -0.2 330,653 - GFF648 0.70 -0.1 331,550 + GFF650 0.57 -0.0 331,550 + GFF650 0.57 -2.0 331,550 + GFF650 0.57 -1.0 331,551 - GFF650 0.57 +0.2 331,595 + GFF650 0.66 -0.2 332,150 - GFF651 0.39 +1.1 332,242 + GFF651 0.48 +1.6 332,242 + GFF651 0.48 +1.0 332,242 + GFF651 0.48 +0.6 332,242 + GFF651 0.48 +0.6 332,242 + GFF651 0.48 -0.2 332,242 + GFF651 0.48 +1.3 332,242 + GFF651 0.48 +2.2 332,243 - GFF651 0.49 +1.1 332,243 - GFF651 0.49 +1.1 332,258 - GFF651 0.50 +2.0 332,530 + GFF651 0.78 +1.1 332,530 + GFF651 0.78 +0.8 332,530 + GFF651 0.78 +1.1 332,531 - GFF651 0.79 +2.4 332,680 + +0.9 332,680 + +2.5 332,681 - +1.6 332,734 + +2.2 332,734 + -0.2 332,735 - +1.4
Or see this region's nucleotide sequence