Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF636 and GFF637 are separated by 286 nucleotides GFF637 and GFF638 are separated by 83 nucleotides GFF638 and GFF639 are separated by 14 nucleotides
GFF636 - IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3), at 311,839 to 313,425
GFF636
GFF637 - Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7), at 313,712 to 315,862
GFF637
GFF638 - hypothetical protein, at 315,946 to 316,365
GFF638
GFF639 - Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8), at 316,380 to 317,684
GFF639
Position (kb) 313
314
315
316 Strain fitness (log2 ratio) -2
-1
0
1 at 313.526 kb on + strand at 313.574 kb on + strand at 313.575 kb on - strand at 313.575 kb on - strand at 313.575 kb on - strand at 313.575 kb on - strand at 313.575 kb on - strand at 313.575 kb on - strand at 313.695 kb on + strand at 313.696 kb on - strand at 313.696 kb on - strand at 313.696 kb on - strand at 313.696 kb on - strand at 313.883 kb on + strand at 313.884 kb on - strand at 313.884 kb on - strand at 313.884 kb on - strand at 313.958 kb on + strand, within GFF637 at 313.959 kb on - strand, within GFF637 at 314.003 kb on + strand, within GFF637 at 314.004 kb on - strand, within GFF637 at 314.004 kb on - strand, within GFF637 at 314.004 kb on - strand, within GFF637 at 314.129 kb on + strand, within GFF637 at 314.129 kb on + strand, within GFF637 at 314.129 kb on + strand, within GFF637 at 314.130 kb on - strand, within GFF637 at 314.131 kb on - strand, within GFF637 at 314.357 kb on + strand, within GFF637 at 314.357 kb on + strand, within GFF637 at 314.357 kb on + strand, within GFF637 at 314.357 kb on + strand, within GFF637 at 314.357 kb on + strand, within GFF637 at 314.357 kb on + strand, within GFF637 at 314.358 kb on - strand, within GFF637 at 314.358 kb on - strand, within GFF637 at 314.358 kb on - strand, within GFF637 at 314.358 kb on - strand, within GFF637 at 314.358 kb on - strand, within GFF637 at 314.393 kb on + strand, within GFF637 at 314.393 kb on + strand, within GFF637 at 314.394 kb on - strand, within GFF637 at 314.394 kb on - strand, within GFF637 at 314.394 kb on - strand, within GFF637 at 314.429 kb on + strand, within GFF637 at 314.687 kb on + strand, within GFF637 at 314.687 kb on + strand, within GFF637 at 314.688 kb on - strand, within GFF637 at 314.688 kb on - strand, within GFF637 at 314.688 kb on - strand, within GFF637 at 314.945 kb on + strand, within GFF637 at 314.961 kb on + strand, within GFF637 at 315.421 kb on + strand, within GFF637 at 315.421 kb on + strand, within GFF637 at 315.422 kb on - strand, within GFF637 at 315.425 kb on + strand, within GFF637 at 315.426 kb on - strand, within GFF637 at 315.426 kb on - strand, within GFF637 at 315.704 kb on + strand at 315.705 kb on - strand at 315.705 kb on - strand at 315.759 kb on - strand at 315.771 kb on - strand at 315.771 kb on - strand at 315.771 kb on - strand at 316.360 kb on + strand at 316.360 kb on + strand at 316.360 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 313,526 + +0.3 313,574 + +1.0 313,575 - +0.0 313,575 - -0.6 313,575 - -0.0 313,575 - -0.8 313,575 - -1.2 313,575 - +0.3 313,695 + -0.6 313,696 - -0.4 313,696 - +0.6 313,696 - -0.2 313,696 - -0.4 313,883 + -0.2 313,884 - +0.2 313,884 - -1.2 313,884 - +0.6 313,958 + GFF637 0.11 +0.7 313,959 - GFF637 0.11 +0.2 314,003 + GFF637 0.14 +0.1 314,004 - GFF637 0.14 -2.0 314,004 - GFF637 0.14 -0.2 314,004 - GFF637 0.14 +0.2 314,129 + GFF637 0.19 +0.4 314,129 + GFF637 0.19 -1.8 314,129 + GFF637 0.19 -0.2 314,130 - GFF637 0.19 +0.8 314,131 - GFF637 0.19 -0.2 314,357 + GFF637 0.30 -1.3 314,357 + GFF637 0.30 +0.1 314,357 + GFF637 0.30 -0.5 314,357 + GFF637 0.30 -0.6 314,357 + GFF637 0.30 +0.1 314,357 + GFF637 0.30 -2.0 314,358 - GFF637 0.30 +0.1 314,358 - GFF637 0.30 +0.1 314,358 - GFF637 0.30 -1.3 314,358 - GFF637 0.30 -1.0 314,358 - GFF637 0.30 +0.5 314,393 + GFF637 0.32 -0.3 314,393 + GFF637 0.32 -0.1 314,394 - GFF637 0.32 -0.8 314,394 - GFF637 0.32 -0.2 314,394 - GFF637 0.32 -0.1 314,429 + GFF637 0.33 +0.3 314,687 + GFF637 0.45 -0.3 314,687 + GFF637 0.45 -1.8 314,688 - GFF637 0.45 -0.4 314,688 - GFF637 0.45 -2.3 314,688 - GFF637 0.45 -1.6 314,945 + GFF637 0.57 -0.2 314,961 + GFF637 0.58 -1.8 315,421 + GFF637 0.79 +0.2 315,421 + GFF637 0.79 -1.4 315,422 - GFF637 0.79 -0.9 315,425 + GFF637 0.80 +0.4 315,426 - GFF637 0.80 +0.2 315,426 - GFF637 0.80 -0.4 315,704 + +0.1 315,705 - +1.1 315,705 - -0.2 315,759 - +0.5 315,771 - -0.6 315,771 - +0.9 315,771 - +0.2 316,360 + +0.3 316,360 + -0.1 316,360 + -0.3
Or see this region's nucleotide sequence