Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5853 and GFF5854 overlap by 4 nucleotides
GFF5853 - Enoyl-CoA hydratase (EC 4.2.1.17), at 56,467 to 57,015
GFF5853
GFF5854 - Enoyl-CoA hydratase (EC 4.2.1.17), at 57,012 to 57,887
GFF5854
Position (kb) 57
58 Strain fitness (log2 ratio) -1
0
1
2 at 56.055 kb on + strand at 56.055 kb on + strand at 56.056 kb on - strand at 56.056 kb on - strand at 56.122 kb on + strand at 56.122 kb on + strand at 56.135 kb on + strand at 56.222 kb on + strand at 56.222 kb on + strand at 56.223 kb on - strand at 56.223 kb on - strand at 56.262 kb on - strand at 56.289 kb on + strand at 56.289 kb on + strand at 56.289 kb on + strand at 56.290 kb on - strand at 56.290 kb on - strand at 56.294 kb on + strand at 56.294 kb on + strand at 56.294 kb on + strand at 56.295 kb on - strand at 56.295 kb on - strand at 56.295 kb on - strand at 56.408 kb on - strand at 56.420 kb on + strand at 56.421 kb on - strand at 56.466 kb on - strand at 56.466 kb on - strand at 56.476 kb on + strand at 56.476 kb on + strand at 56.573 kb on + strand, within GFF5853 at 56.574 kb on - strand, within GFF5853 at 56.574 kb on - strand, within GFF5853 at 56.574 kb on - strand, within GFF5853 at 56.855 kb on + strand, within GFF5853 at 56.855 kb on + strand, within GFF5853 at 56.855 kb on + strand, within GFF5853 at 56.856 kb on - strand, within GFF5853 at 56.856 kb on - strand, within GFF5853 at 56.908 kb on + strand, within GFF5853 at 56.908 kb on + strand, within GFF5853 at 56.919 kb on - strand, within GFF5853 at 56.919 kb on - strand, within GFF5853 at 56.919 kb on - strand, within GFF5853 at 56.933 kb on + strand, within GFF5853 at 57.018 kb on + strand at 57.018 kb on + strand at 57.019 kb on - strand at 57.019 kb on - strand at 57.269 kb on + strand, within GFF5854 at 57.269 kb on + strand, within GFF5854 at 57.269 kb on + strand, within GFF5854 at 57.270 kb on - strand, within GFF5854 at 57.297 kb on - strand, within GFF5854 at 57.302 kb on - strand, within GFF5854 at 57.357 kb on - strand, within GFF5854 at 57.357 kb on - strand, within GFF5854 at 57.357 kb on - strand, within GFF5854 at 57.397 kb on + strand, within GFF5854 at 57.397 kb on + strand, within GFF5854 at 57.398 kb on - strand, within GFF5854 at 57.552 kb on + strand, within GFF5854 at 57.552 kb on + strand, within GFF5854 at 57.553 kb on - strand, within GFF5854 at 57.553 kb on - strand, within GFF5854 at 57.553 kb on - strand, within GFF5854 at 57.553 kb on - strand, within GFF5854 at 57.642 kb on + strand, within GFF5854 at 57.642 kb on + strand, within GFF5854 at 57.643 kb on - strand, within GFF5854 at 57.643 kb on - strand, within GFF5854 at 57.643 kb on - strand, within GFF5854 at 57.649 kb on + strand, within GFF5854 at 57.650 kb on - strand, within GFF5854 at 57.686 kb on + strand, within GFF5854 at 57.686 kb on + strand, within GFF5854 at 57.686 kb on + strand, within GFF5854 at 57.697 kb on + strand, within GFF5854 at 57.711 kb on + strand, within GFF5854 at 57.911 kb on - strand at 57.979 kb on + strand at 57.979 kb on + strand at 57.988 kb on + strand at 57.989 kb on - strand at 57.989 kb on - strand at 57.989 kb on - strand at 57.989 kb on - strand at 57.989 kb on - strand at 57.989 kb on - strand at 58.055 kb on + strand at 58.128 kb on + strand at 58.128 kb on + strand at 58.128 kb on + strand at 58.129 kb on - strand at 58.443 kb on + strand at 58.444 kb on - strand at 58.489 kb on + strand at 58.494 kb on + strand at 58.545 kb on + strand at 58.545 kb on + strand at 58.545 kb on + strand at 58.546 kb on - strand at 58.553 kb on + strand at 58.653 kb on + strand at 58.653 kb on + strand at 58.653 kb on + strand at 58.654 kb on - strand at 58.654 kb on - strand at 58.654 kb on - strand at 58.654 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 56,055 + +0.6 56,055 + -0.6 56,056 - +0.3 56,056 - -0.5 56,122 + -0.6 56,122 + -1.6 56,135 + -0.9 56,222 + -0.6 56,222 + +0.2 56,223 - -1.2 56,223 - +0.0 56,262 - +0.1 56,289 + +0.5 56,289 + -0.1 56,289 + -0.3 56,290 - -0.7 56,290 - -1.6 56,294 + +0.1 56,294 + +0.8 56,294 + +0.3 56,295 - -0.5 56,295 - -0.3 56,295 - +1.1 56,408 - +0.4 56,420 + -0.0 56,421 - -0.5 56,466 - +0.5 56,466 - -0.4 56,476 + +0.3 56,476 + +0.5 56,573 + GFF5853 0.19 -1.1 56,574 - GFF5853 0.19 -0.5 56,574 - GFF5853 0.19 +0.1 56,574 - GFF5853 0.19 -0.5 56,855 + GFF5853 0.71 -0.6 56,855 + GFF5853 0.71 -0.6 56,855 + GFF5853 0.71 +0.2 56,856 - GFF5853 0.71 +0.1 56,856 - GFF5853 0.71 +1.3 56,908 + GFF5853 0.80 +0.2 56,908 + GFF5853 0.80 -0.8 56,919 - GFF5853 0.82 -1.1 56,919 - GFF5853 0.82 -0.3 56,919 - GFF5853 0.82 +0.2 56,933 + GFF5853 0.85 +0.5 57,018 + +0.5 57,018 + -0.6 57,019 - -0.4 57,019 - -0.3 57,269 + GFF5854 0.29 -1.2 57,269 + GFF5854 0.29 +0.3 57,269 + GFF5854 0.29 -0.1 57,270 - GFF5854 0.29 -0.0 57,297 - GFF5854 0.33 -0.2 57,302 - GFF5854 0.33 +1.1 57,357 - GFF5854 0.39 +0.4 57,357 - GFF5854 0.39 +0.2 57,357 - GFF5854 0.39 -0.5 57,397 + GFF5854 0.44 -0.1 57,397 + GFF5854 0.44 -0.3 57,398 - GFF5854 0.44 +0.4 57,552 + GFF5854 0.62 +0.9 57,552 + GFF5854 0.62 -0.6 57,553 - GFF5854 0.62 +0.2 57,553 - GFF5854 0.62 -0.4 57,553 - GFF5854 0.62 -0.1 57,553 - GFF5854 0.62 -0.3 57,642 + GFF5854 0.72 -0.1 57,642 + GFF5854 0.72 +0.2 57,643 - GFF5854 0.72 +0.3 57,643 - GFF5854 0.72 +0.3 57,643 - GFF5854 0.72 +1.9 57,649 + GFF5854 0.73 -0.1 57,650 - GFF5854 0.73 -1.2 57,686 + GFF5854 0.77 -0.1 57,686 + GFF5854 0.77 +0.4 57,686 + GFF5854 0.77 +0.0 57,697 + GFF5854 0.78 +0.1 57,711 + GFF5854 0.80 -0.0 57,911 - -0.1 57,979 + -0.4 57,979 + +0.1 57,988 + +1.2 57,989 - -0.3 57,989 - +0.6 57,989 - +0.2 57,989 - +0.5 57,989 - -0.1 57,989 - -0.1 58,055 + +0.2 58,128 + -0.2 58,128 + +0.3 58,128 + +1.5 58,129 - -1.3 58,443 + +0.4 58,444 - +0.4 58,489 + +0.5 58,494 + -0.0 58,545 + -0.3 58,545 + +0.4 58,545 + -0.2 58,546 - +0.5 58,553 + +0.3 58,653 + -0.8 58,653 + +0.0 58,653 + -0.6 58,654 - -0.3 58,654 - +0.1 58,654 - -0.6 58,654 - +0.5
Or see this region's nucleotide sequence