Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF576

Experiment: Ying_Nucleobase14 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF574 and GFF575 overlap by 4 nucleotidesGFF575 and GFF576 are separated by 36 nucleotidesGFF576 and GFF577 are separated by 34 nucleotides GFF574 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 245,746 to 246,363 GFF574 GFF575 - Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-), at 246,360 to 247,082 GFF575 GFF576 - TonB, C-terminal precursor, at 247,119 to 247,988 GFF576 GFF577 - Exoribonuclease II (EC 3.1.13.1), at 248,023 to 250,098 GFF577 Position (kb) 247 248Strain fitness (log2 ratio) -1 0 1at 246.152 kb on + strand, within GFF574at 246.152 kb on + strand, within GFF574at 246.153 kb on - strand, within GFF574at 246.251 kb on + strand, within GFF574at 246.251 kb on + strand, within GFF574at 246.251 kb on + strand, within GFF574at 246.252 kb on - strand, within GFF574at 246.252 kb on - strand, within GFF574at 246.252 kb on - strand, within GFF574at 246.252 kb on - strand, within GFF574at 246.285 kb on - strand, within GFF574at 246.419 kb on - strandat 246.419 kb on - strandat 246.419 kb on - strandat 246.419 kb on - strandat 246.521 kb on - strand, within GFF575at 246.580 kb on + strand, within GFF575at 246.580 kb on + strand, within GFF575at 246.581 kb on - strand, within GFF575at 246.581 kb on - strand, within GFF575at 247.120 kb on + strandat 247.120 kb on + strandat 247.120 kb on + strandat 247.121 kb on - strandat 247.121 kb on - strandat 247.121 kb on - strandat 247.121 kb on - strandat 247.426 kb on + strand, within GFF576at 247.427 kb on - strand, within GFF576at 247.429 kb on + strand, within GFF576at 247.429 kb on + strand, within GFF576at 247.429 kb on + strand, within GFF576at 247.429 kb on + strand, within GFF576at 247.429 kb on + strand, within GFF576at 247.429 kb on + strand, within GFF576at 247.429 kb on - strand, within GFF576at 247.430 kb on - strand, within GFF576at 247.438 kb on + strand, within GFF576at 247.438 kb on + strand, within GFF576at 247.438 kb on + strand, within GFF576at 247.438 kb on + strand, within GFF576at 247.438 kb on + strand, within GFF576at 247.439 kb on - strand, within GFF576at 247.439 kb on - strand, within GFF576at 247.439 kb on - strand, within GFF576at 247.468 kb on + strand, within GFF576at 247.468 kb on + strand, within GFF576at 247.468 kb on + strand, within GFF576at 247.468 kb on + strand, within GFF576at 247.468 kb on + strand, within GFF576at 247.469 kb on - strand, within GFF576at 247.469 kb on - strand, within GFF576at 247.966 kb on + strandat 247.966 kb on + strandat 247.967 kb on - strandat 247.967 kb on - strandat 247.967 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1
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246,152 + GFF574 0.66 -0.1
246,152 + GFF574 0.66 -0.2
246,153 - GFF574 0.66 -0.5
246,251 + GFF574 0.82 +0.1
246,251 + GFF574 0.82 +0.1
246,251 + GFF574 0.82 +0.6
246,252 - GFF574 0.82 +0.2
246,252 - GFF574 0.82 -0.7
246,252 - GFF574 0.82 +1.4
246,252 - GFF574 0.82 +1.2
246,285 - GFF574 0.87 +0.3
246,419 - -0.7
246,419 - +0.5
246,419 - +0.6
246,419 - -1.1
246,521 - GFF575 0.22 +0.5
246,580 + GFF575 0.30 +0.0
246,580 + GFF575 0.30 -0.8
246,581 - GFF575 0.31 -1.0
246,581 - GFF575 0.31 -1.6
247,120 + -0.1
247,120 + -1.2
247,120 + -0.2
247,121 - +0.2
247,121 - +0.4
247,121 - -0.6
247,121 - -0.7
247,426 + GFF576 0.35 -0.1
247,427 - GFF576 0.35 +1.6
247,429 + GFF576 0.36 +0.6
247,429 + GFF576 0.36 +0.2
247,429 + GFF576 0.36 +0.9
247,429 + GFF576 0.36 +0.6
247,429 + GFF576 0.36 -0.5
247,429 + GFF576 0.36 +0.3
247,429 - GFF576 0.36 +1.6
247,430 - GFF576 0.36 +0.5
247,438 + GFF576 0.37 +0.2
247,438 + GFF576 0.37 +0.2
247,438 + GFF576 0.37 +0.4
247,438 + GFF576 0.37 +0.4
247,438 + GFF576 0.37 +0.1
247,439 - GFF576 0.37 -0.3
247,439 - GFF576 0.37 +0.0
247,439 - GFF576 0.37 +0.2
247,468 + GFF576 0.40 +0.5
247,468 + GFF576 0.40 -0.2
247,468 + GFF576 0.40 -1.2
247,468 + GFF576 0.40 +0.4
247,468 + GFF576 0.40 -0.1
247,469 - GFF576 0.40 +0.7
247,469 - GFF576 0.40 +0.3
247,966 + +0.2
247,966 + -0.1
247,967 - -0.0
247,967 - +0.9
247,967 - -1.2

Or see this region's nucleotide sequence