Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5655

Experiment: Ying_Nucleobase14 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 1
2,677,301	+		GFF5654	0.31	-0.1
2,677,301	+		GFF5654	0.31	+0.0
2,677,301	+		GFF5654	0.31	+0.0
2,677,416	-		GFF5654	0.43	-0.2
2,677,571	+		GFF5654	0.57	-0.8
2,677,607	+		GFF5654	0.61	+0.2
2,677,608	-		GFF5654	0.61	+0.3
2,677,652	+		GFF5654	0.65	-0.8
2,677,653	-		GFF5654	0.65	+0.7
2,677,653	-		GFF5654	0.65	+0.0
2,677,653	-		GFF5654	0.65	-0.8
2,677,653	-		GFF5654	0.65	-2.0
2,677,910	+				-0.6
2,678,160	+				+0.0
2,678,161	-				+0.0
2,678,297	+		GFF5655	0.10	+0.7
2,678,297	+		GFF5655	0.10	+0.1
2,678,298	-		GFF5655	0.10	+0.5
2,678,298	-		GFF5655	0.10	-0.6
2,678,298	-		GFF5655	0.10	-0.8
2,678,793	-		GFF5655	0.63	-0.1
2,678,987	+		GFF5655	0.83	-1.0
2,678,988	-		GFF5655	0.83	-0.7
2,678,988	-		GFF5655	0.83	-0.3
2,679,110	-				-0.1
2,679,148	+				+0.1
2,679,148	+				-0.4
2,679,148	+				-0.4
2,679,149	-				+0.2
2,679,571	+		GFF5656	0.76	-0.0
2,679,571	+		GFF5656	0.76	-0.6
2,679,631	+		GFF5656	0.86	-0.0
2,679,632	-		GFF5656	0.86	-0.3
2,679,632	-		GFF5656	0.86	+1.2
2,679,745	+				-0.5
2,680,021	+		GFF5657	0.21	-0.0