Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5245

Experiment: Ying_Nucleobase14 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 1
2,260,299	+		GFF5244	0.35	-1.2
2,260,560	+				-0.2
2,260,560	+				-2.1
2,260,560	+				+0.1
2,260,560	+				-2.4
2,260,561	-				-1.9
2,260,561	-				-1.3
2,260,561	-				-1.2
2,260,561	-				-1.3
2,260,656	+				-0.5
2,260,656	+				-0.1
2,260,657	-				-0.6
2,260,657	-				+0.1
2,260,657	-				+0.2
2,260,659	-				+0.4
2,260,668	+				-0.4
2,260,669	-				+0.2
2,260,669	-				-0.3
2,260,669	-				-0.4
2,260,731	+				+0.1
2,260,732	-				-0.7
2,260,732	-				+0.4
2,260,903	+		GFF5245	0.13	-0.4
2,260,904	-		GFF5245	0.13	-0.6
2,261,069	-		GFF5245	0.26	-0.6
2,261,295	+		GFF5245	0.43	-0.6
2,261,296	-		GFF5245	0.43	+0.0
2,261,305	+		GFF5245	0.44	-0.2
2,261,306	-		GFF5245	0.44	+0.3
2,261,306	-		GFF5245	0.44	-0.9
2,261,461	+		GFF5245	0.56	+0.2
2,261,461	+		GFF5245	0.56	-0.3
2,262,048	+				+0.6
2,262,048	+				+1.9
2,262,048	+				+0.9
2,262,049	-				-0.7
2,262,049	-				-0.0
2,262,075	+				-0.1
2,262,076	-				+0.0
2,262,549	+		GFF5246	0.62	+0.0
2,262,550	-		GFF5246	0.62	-0.2
2,262,884	+				-0.3