Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5235

Experiment: Ying_Nucleobase14 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 1
2,249,960	+				+0.3
2,249,960	+				+0.6
2,249,961	-				+0.3
2,250,350	+		GFF5234	0.55	+0.1
2,250,351	-		GFF5234	0.56	-0.6
2,250,513	+		GFF5234	0.75	+0.6
2,250,514	-		GFF5234	0.75	+0.5
2,250,616	-		GFF5234	0.87	-0.0
2,250,650	+				-0.9
2,250,716	+				+1.1
2,250,717	-				-0.0
2,250,825	+		GFF5235	0.11	-0.6
2,250,825	+		GFF5235	0.11	-1.4
2,250,825	+		GFF5235	0.11	-0.9
2,250,870	+		GFF5235	0.16	-0.8
2,250,999	+		GFF5235	0.31	+0.4
2,251,230	+		GFF5235	0.58	+0.3
2,251,287	+		GFF5235	0.64	-1.0
2,251,410	+		GFF5235	0.78	+0.1
2,251,411	-		GFF5235	0.78	-0.1
2,251,428	+		GFF5235	0.80	-0.9
2,251,428	+		GFF5235	0.80	+0.1
2,251,429	-		GFF5235	0.80	-0.8
2,251,468	-		GFF5235	0.85	-0.3
2,251,753	+		GFF5236	0.17	+0.0
2,251,765	+		GFF5236	0.18	-2.5
2,251,766	-		GFF5236	0.18	+0.2
2,252,561	+				+0.3
2,252,562	-				+0.8
2,252,562	-				-0.9