Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5178

Experiment: Ying_Nucleobase14 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 1
2,193,942	+				-0.4
2,193,943	-				+0.0
2,193,943	-				-0.4
2,193,943	-				+0.4
2,194,032	+				-0.4
2,194,114	-		GFF5177	0.20	+0.1
2,194,114	-		GFF5177	0.20	+0.2
2,194,114	-		GFF5177	0.20	-0.6
2,194,260	+		GFF5177	0.41	-0.0
2,194,260	+		GFF5177	0.41	+0.1
2,194,260	+		GFF5177	0.41	+0.3
2,194,261	-		GFF5177	0.41	-0.0
2,194,261	-		GFF5177	0.41	-0.6
2,194,261	-		GFF5177	0.41	+0.4
2,194,296	+		GFF5177	0.46	+0.3
2,194,536	+		GFF5177	0.80	-0.9
2,194,537	-		GFF5177	0.80	+0.5
2,194,608	+		GFF5177	0.90	-0.6
2,194,608	+		GFF5177	0.90	+0.6
2,194,608	+		GFF5177	0.90	+0.2
2,194,695	-				+0.1
2,194,837	+		GFF5178	0.22	-0.1
2,194,837	+		GFF5178	0.22	+0.1
2,194,837	+		GFF5178	0.22	-0.6
2,194,849	+		GFF5178	0.25	+1.3
2,194,849	+		GFF5178	0.25	+0.2
2,194,850	-		GFF5178	0.25	+0.2
2,194,850	-		GFF5178	0.25	+0.0
2,195,089	+		GFF5178	0.68	+0.6
2,195,089	+		GFF5178	0.68	-0.3
2,195,089	+		GFF5178	0.68	+0.8
2,195,089	+		GFF5178	0.68	+0.7
2,195,090	-		GFF5178	0.68	+0.1
2,195,090	-		GFF5178	0.68	+0.5
2,195,090	-		GFF5178	0.68	-0.3
2,195,090	-		GFF5178	0.68	+0.2
2,195,090	-		GFF5178	0.68	-0.1
2,195,090	-		GFF5178	0.68	+0.4
2,195,245	+				+0.7
2,195,246	-				-0.8
2,195,466	-		GFF5179	0.34	+0.3
2,195,477	+		GFF5179	0.37	+0.3
2,195,478	-		GFF5179	0.37	+0.1
2,195,925	+		GFF5180	0.20	-0.7
2,195,925	+		GFF5180	0.20	-0.5
2,195,925	+		GFF5180	0.20	+0.0
2,195,926	-		GFF5180	0.20	-0.5
2,195,926	-		GFF5180	0.20	-1.5
2,195,926	-		GFF5180	0.20	+0.3
2,195,926	-		GFF5180	0.20	+1.1
2,195,926	-		GFF5180	0.20	-0.5
2,195,926	-		GFF5180	0.20	-0.3
2,195,926	-		GFF5180	0.20	-0.5
2,195,988	+		GFF5180	0.29	-1.3
2,195,988	+		GFF5180	0.29	-0.6
2,195,988	+		GFF5180	0.29	-0.2
2,195,988	+		GFF5180	0.29	+0.1
2,195,989	-		GFF5180	0.29	+1.0
2,195,989	-		GFF5180	0.29	+0.5
2,195,989	-		GFF5180	0.29	-0.2
2,195,989	-		GFF5180	0.29	+0.7
2,195,989	-		GFF5180	0.29	+0.4
2,196,097	-		GFF5180	0.45	+1.1