Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4689

Experiment: Ying_Nucleobase14 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 1
1,638,961	+		GFF4687	0.79	+0.4
1,638,961	+		GFF4687	0.79	+0.2
1,638,962	-		GFF4687	0.79	-0.5
1,638,962	-		GFF4687	0.79	-0.0
1,638,962	-		GFF4687	0.79	-0.4
1,639,129	+				-0.1
1,639,129	+				+0.3
1,639,189	+				-0.7
1,639,357	-		GFF4688	0.20	+0.1
1,639,500	+		GFF4688	0.40	-0.4
1,639,501	-		GFF4688	0.40	+0.0
1,639,506	+		GFF4688	0.41	+0.1
1,639,506	+		GFF4688	0.41	+0.1
1,639,507	-		GFF4688	0.41	+0.2
1,639,574	-		GFF4688	0.50	-0.0
1,639,587	+		GFF4688	0.52	+0.1
1,639,587	+		GFF4688	0.52	-1.4
1,639,587	+		GFF4688	0.52	+0.5
1,639,588	-		GFF4688	0.52	-0.2
1,639,680	+		GFF4688	0.65	-0.3
1,639,681	-		GFF4688	0.65	+0.1
1,639,681	-		GFF4688	0.65	-0.5
1,639,806	+		GFF4688	0.83	-0.4
1,639,806	+		GFF4688	0.83	+0.0
1,639,807	-		GFF4688	0.83	+1.1
1,640,093	+				-0.5
1,640,177	+		GFF4689	0.14	-0.1
1,640,337	-		GFF4689	0.24	-0.5
1,640,337	-		GFF4689	0.24	+0.5
1,640,375	+		GFF4689	0.26	+0.9
1,640,376	-		GFF4689	0.26	-0.1
1,640,376	-		GFF4689	0.26	-0.1
1,640,378	+		GFF4689	0.26	+0.9
1,640,606	+		GFF4689	0.40	+0.6
1,640,828	+		GFF4689	0.53	+0.9
1,640,829	-		GFF4689	0.53	+0.8
1,640,829	-		GFF4689	0.53	-0.1
1,640,834	+		GFF4689	0.53	-0.9
1,640,834	+		GFF4689	0.53	-0.2
1,640,834	+		GFF4689	0.53	-0.4
1,640,951	+		GFF4689	0.60	+0.3
1,640,951	+		GFF4689	0.60	-2.1
1,640,952	-		GFF4689	0.60	-0.8
1,640,952	-		GFF4689	0.60	+0.9
1,640,952	-		GFF4689	0.60	+0.8
1,640,952	-		GFF4689	0.60	-0.1
1,640,952	-		GFF4689	0.60	+0.2
1,640,952	-		GFF4689	0.60	+0.2
1,641,035	+		GFF4689	0.65	-0.2
1,641,035	+		GFF4689	0.65	+0.2
1,641,036	-		GFF4689	0.65	+0.8
1,641,436	+		GFF4689	0.88	+0.1
1,641,569	+				-0.1
1,641,570	-				-0.1
1,641,570	-				+0.5
1,641,570	-				+0.2
1,641,570	-				+0.1
1,641,778	+				-1.1
1,641,778	+				-0.1
1,641,823	+		GFF4690	0.21	+0.3
1,641,823	+		GFF4690	0.21	-0.6
1,641,823	+		GFF4690	0.21	+0.5
1,641,823	+		GFF4690	0.21	+0.5
1,641,824	-		GFF4690	0.21	+0.4
1,641,824	-		GFF4690	0.21	-0.9
1,642,033	-				-1.5
1,642,033	-				-0.9
1,642,125	+				+0.1
1,642,125	+				-0.3
1,642,125	+				-0.8
1,642,125	+				-1.7
1,642,126	-				-1.1
1,642,126	-				+0.3
1,642,126	-				-0.3
1,642,132	-				-0.2
1,642,183	-				-0.7
1,642,183	-				-0.4
1,642,183	-				-1.5
1,642,183	-				+0.8
1,642,400	+		GFF4691	0.19	+1.5
1,642,499	+		GFF4691	0.31	-0.3
1,642,550	+		GFF4691	0.37	+0.4
1,642,550	+		GFF4691	0.37	-1.5
1,642,550	+		GFF4691	0.37	-0.1
1,642,550	+		GFF4691	0.37	-0.4
1,642,551	-		GFF4691	0.37	-0.2
1,642,619	+		GFF4691	0.45	+0.3
1,642,619	+		GFF4691	0.45	-0.3
1,642,619	+		GFF4691	0.45	-1.7
1,642,620	-		GFF4691	0.45	-0.4
1,642,620	-		GFF4691	0.45	-0.2
1,642,620	-		GFF4691	0.45	+0.1
1,642,622	+		GFF4691	0.46	-0.1
1,642,622	+		GFF4691	0.46	+0.9