Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF466

Experiment: Ying_Nucleobase14 rep A; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF465 and GFF466 overlap by 4 nucleotidesGFF466 and GFF467 are separated by 8 nucleotidesGFF467 and GFF468 are separated by 61 nucleotides GFF465 - ABC transporter ATP-binding protein, at 129,323 to 130,891 GFF465 GFF466 - Isochorismatase (EC 3.3.2.1), at 130,888 to 131,577 GFF466 GFF467 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 131,586 to 132,506 GFF467 GFF468 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 132,568 to 133,665 GFF468 Position (kb) 130 131 132Strain fitness (log2 ratio) -1 0 1at 130.230 kb on + strand, within GFF465at 130.231 kb on - strand, within GFF465at 130.231 kb on - strand, within GFF465at 131.369 kb on + strand, within GFF466at 131.674 kb on + strandat 132.328 kb on + strand, within GFF467

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1
remove
130,230 + GFF465 0.58 -0.4
130,231 - GFF465 0.58 +0.1
130,231 - GFF465 0.58 -0.8
131,369 + GFF466 0.70 +0.5
131,674 + +0.1
132,328 + GFF467 0.81 -1.0

Or see this region's nucleotide sequence