Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4572

Experiment: Ying_Nucleobase14 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 1
1,514,876	+				-0.5
1,514,876	+				-1.0
1,514,876	+				-0.2
1,514,877	-				+0.4
1,514,877	-				+0.3
1,515,010	+				-0.6
1,515,285	+		GFF4571	0.34	-1.8
1,515,285	+		GFF4571	0.34	-0.5
1,515,286	-		GFF4571	0.34	-0.2
1,515,286	-		GFF4571	0.34	-0.2
1,515,286	-		GFF4571	0.34	-0.2
1,515,360	+		GFF4571	0.44	+0.1
1,515,360	+		GFF4571	0.44	-0.1
1,515,360	+		GFF4571	0.44	-0.3
1,515,559	-		GFF4571	0.70	+0.5
1,515,559	-		GFF4571	0.70	-1.1
1,515,559	-		GFF4571	0.70	+3.9
1,515,559	-		GFF4571	0.70	+0.1
1,515,906	-		GFF4572	0.15	+0.5
1,515,907	+		GFF4572	0.15	+0.1
1,516,102	+		GFF4572	0.42	+0.4
1,516,102	+		GFF4572	0.42	+0.4
1,516,103	-		GFF4572	0.42	-0.3
1,516,103	-		GFF4572	0.42	-0.0
1,516,103	-		GFF4572	0.42	+1.3
1,516,103	-		GFF4572	0.42	-0.8
1,516,103	-		GFF4572	0.42	-0.2
1,516,315	+		GFF4572	0.70	+0.5
1,516,315	+		GFF4572	0.70	+0.3
1,516,316	-		GFF4572	0.71	-0.5
1,516,316	-		GFF4572	0.71	+0.1
1,516,316	-		GFF4572	0.71	+0.0
1,516,316	-		GFF4572	0.71	+0.1
1,516,471	+				+0.3
1,516,471	+				+0.0
1,516,471	+				+0.3
1,516,471	+				-1.9
1,516,472	-				+0.7
1,516,472	-				+0.3
1,516,472	-				+0.1
1,516,474	+				-1.0
1,516,475	-				+0.1
1,516,475	-				-0.2
1,516,475	-				-0.0
1,516,475	-				+0.3
1,516,475	-				+1.0
1,516,805	+		GFF4573	0.29	+0.5
1,516,805	+		GFF4573	0.29	+0.2
1,516,805	+		GFF4573	0.29	+0.5
1,516,806	-		GFF4573	0.29	+0.2
1,516,806	-		GFF4573	0.29	-0.2
1,516,806	-		GFF4573	0.29	-0.1
1,516,806	-		GFF4573	0.29	+0.4
1,516,806	-		GFF4573	0.29	-1.5
1,516,967	+		GFF4573	0.49	+0.8
1,517,003	+		GFF4573	0.54	+0.2
1,517,003	+		GFF4573	0.54	+0.1
1,517,004	-		GFF4573	0.54	+0.3
1,517,004	-		GFF4573	0.54	+0.2
1,517,108	+		GFF4573	0.67	-0.7
1,517,108	+		GFF4573	0.67	+1.2
1,517,108	+		GFF4573	0.67	+0.4
1,517,108	+		GFF4573	0.67	-0.5
1,517,108	+		GFF4573	0.67	+0.3
1,517,376	+				+0.2
1,517,376	+				+0.2
1,517,377	-				+1.4
1,517,377	-				-0.1
1,517,377	-				-1.4
1,517,377	-				-0.2
1,517,377	-				-0.0
1,517,377	-				-0.1
1,517,377	-				-0.7
1,517,377	-				-0.7
1,517,424	+				+1.1
1,517,425	-				-1.3
1,517,425	-				-0.0
1,517,425	-				-0.8
1,517,425	-				-0.2
1,517,434	+				+0.2
1,517,434	+				-0.0
1,517,434	+				+0.1
1,517,476	-				+0.9
1,517,526	+		GFF4574	0.23	-1.7
1,517,526	+		GFF4574	0.23	-1.0
1,517,526	+		GFF4574	0.23	-0.1
1,517,526	+		GFF4574	0.23	-0.2
1,517,526	+		GFF4574	0.23	+0.2
1,517,526	+		GFF4574	0.23	+0.7
1,517,527	-		GFF4574	0.24	-0.0
1,517,527	-		GFF4574	0.24	-0.3
1,517,527	-		GFF4574	0.24	+1.2
1,517,527	-		GFF4574	0.24	-0.0
1,517,527	-		GFF4574	0.24	-0.3
1,517,527	-		GFF4574	0.24	+1.1
1,517,527	-		GFF4574	0.24	-1.8