Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4555

Experiment: Ying_Nucleobase14 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4554 and GFF4555 are separated by 14 nucleotidesGFF4555 and GFF4556 are separated by 0 nucleotides GFF4554 - Chromosome partition protein smc, at 1,486,410 to 1,489,928 GFF4554 GFF4555 - Cell division protein, at 1,489,943 to 1,491,079 GFF4555 GFF4556 - DNA ligase (EC 6.5.1.2), at 1,491,080 to 1,493,155 GFF4556 Position (kb) 1489 1490 1491 1492Strain fitness (log2 ratio) -1 0 1at 1490.102 kb on + strand, within GFF4555at 1490.679 kb on - strand, within GFF4555at 1491.014 kb on + strandat 1491.015 kb on - strandat 1491.015 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1
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1,490,102 + GFF4555 0.14 -0.5
1,490,679 - GFF4555 0.65 -1.2
1,491,014 + -1.4
1,491,015 - -0.1
1,491,015 - -1.0

Or see this region's nucleotide sequence