Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4518

Experiment: Ying_Nucleobase14 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 1
1,443,221	+		GFF4517	0.58	-0.1
1,443,275	+		GFF4517	0.60	+0.4
1,443,276	-		GFF4517	0.60	+0.4
1,443,339	-		GFF4517	0.63	-0.4
1,443,339	-		GFF4517	0.63	-0.0
1,443,339	-		GFF4517	0.63	+0.5
1,443,560	+		GFF4517	0.72	+0.5
1,443,560	+		GFF4517	0.72	+0.3
1,443,560	+		GFF4517	0.72	-1.7
1,443,560	+		GFF4517	0.72	-0.1
1,443,560	+		GFF4517	0.72	-0.3
1,443,561	-		GFF4517	0.72	+1.5
1,443,561	-		GFF4517	0.72	-0.7
1,443,561	-		GFF4517	0.72	-0.0
1,443,561	-		GFF4517	0.72	+0.2
1,443,725	+		GFF4517	0.80	+1.2
1,443,725	+		GFF4517	0.80	+1.6
1,443,726	-		GFF4517	0.80	-0.3
1,443,726	-		GFF4517	0.80	-0.1
1,443,726	-		GFF4517	0.80	-2.2
1,443,728	+		GFF4517	0.80	-0.5
1,443,728	+		GFF4517	0.80	+0.9
1,443,810	-		GFF4517	0.83	-0.5
1,443,866	+		GFF4517	0.86	+0.4
1,443,956	+		GFF4517	0.90	-0.3
1,444,115	+				+1.5
1,444,116	-				-0.3
1,444,178	+				-1.8
1,444,179	-				-1.5
1,444,179	-				+0.8
1,445,318	+		GFF4519	0.19	+0.5
1,445,318	+		GFF4519	0.19	+0.4
1,445,318	+		GFF4519	0.19	-0.3
1,445,319	-		GFF4519	0.19	+0.0
1,445,319	-		GFF4519	0.19	-0.1