Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4424

Experiment: Ying_Nucleobase14 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 1
1,355,323	-		GFF4423	0.28	+0.1
1,355,323	-		GFF4423	0.28	-0.3
1,355,323	-		GFF4423	0.28	-0.2
1,355,323	-		GFF4423	0.28	+0.2
1,355,360	-		GFF4423	0.33	+0.1
1,355,527	-		GFF4423	0.57	-0.2
1,355,555	+		GFF4423	0.61	-0.1
1,355,555	+		GFF4423	0.61	+0.4
1,355,605	-		GFF4423	0.68	+1.3
1,356,218	+				-0.5
1,356,218	+				+0.5
1,356,283	+				+0.2
1,356,911	-		GFF4424	0.66	+2.4
1,356,911	-		GFF4424	0.66	+0.3
1,357,239	-				-1.0
1,357,355	-				-0.8
1,357,416	-		GFF4425	0.12	+0.8
1,357,488	+		GFF4425	0.20	+1.8
1,357,488	+		GFF4425	0.20	+0.4
1,357,508	+		GFF4425	0.22	-1.5
1,357,558	-		GFF4425	0.27	-1.2
1,357,779	+		GFF4425	0.51	-0.1
1,357,781	-		GFF4425	0.51	+0.0
1,357,785	+		GFF4425	0.51	+0.2
1,357,786	-		GFF4425	0.51	-3.8
1,357,830	-		GFF4425	0.56	+0.2
1,357,863	-		GFF4425	0.60	+0.7
1,357,864	+		GFF4425	0.60	-1.5
1,357,916	+		GFF4425	0.65	+0.4
1,357,917	-		GFF4425	0.65	+0.0
1,357,937	-		GFF4425	0.67	+0.3
1,358,007	+		GFF4425	0.75	-0.4
1,358,007	+		GFF4425	0.75	-1.5