Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4365

Experiment: Ying_Nucleobase14 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 1
1,295,122	-		GFF4364	0.12	+0.1
1,295,136	+		GFF4364	0.14	+0.7
1,295,136	+		GFF4364	0.14	-1.3
1,295,136	+		GFF4364	0.14	+0.9
1,295,199	+		GFF4364	0.23	+0.0
1,295,200	-		GFF4364	0.23	+0.0
1,295,200	-		GFF4364	0.23	-0.1
1,295,251	+		GFF4364	0.30	-0.3
1,295,352	+		GFF4364	0.43	-0.3
1,295,353	-		GFF4364	0.44	-0.3
1,295,444	-		GFF4364	0.56	-0.1
1,295,490	+		GFF4364	0.62	+0.1
1,295,490	+		GFF4364	0.62	+0.0
1,295,491	-		GFF4364	0.62	+0.0
1,295,491	-		GFF4364	0.62	+0.3
1,295,491	-		GFF4364	0.62	-1.8
1,295,491	-		GFF4364	0.62	+0.5
1,295,491	-		GFF4364	0.62	-0.9
1,295,491	-		GFF4364	0.62	+0.3
1,295,527	+		GFF4364	0.67	-0.2
1,295,527	+		GFF4364	0.67	+0.6
1,295,527	+		GFF4364	0.67	+0.5
1,295,527	+		GFF4364	0.67	+0.0
1,295,527	+		GFF4364	0.67	-0.1
1,295,528	-		GFF4364	0.67	-0.0
1,295,528	-		GFF4364	0.67	-0.0
1,295,528	-		GFF4364	0.67	+0.4
1,295,528	-		GFF4364	0.67	+0.2
1,295,528	-		GFF4364	0.67	-0.3
1,295,528	-		GFF4364	0.67	-0.3
1,295,528	-		GFF4364	0.67	+1.2
1,295,528	-		GFF4364	0.67	-0.1
1,295,528	-		GFF4364	0.67	+0.9
1,295,577	+		GFF4364	0.74	-1.0
1,295,577	+		GFF4364	0.74	+0.3
1,295,577	+		GFF4364	0.74	+0.5
1,295,577	+		GFF4364	0.74	+0.5
1,295,577	+		GFF4364	0.74	-0.0
1,295,578	-		GFF4364	0.74	+0.1
1,295,578	-		GFF4364	0.74	+0.4
1,295,750	+				+0.3
1,295,750	+				-0.4
1,295,751	-				+0.0
1,295,849	-				+0.4
1,295,864	+				-0.4
1,295,864	+				-0.0
1,295,864	+				-0.4
1,295,868	+				+0.2
1,295,869	-				+0.3
1,295,869	-				+0.1
1,295,869	-				-0.1
1,295,881	+				+0.2
1,295,882	-				+0.2
1,295,882	-				+1.2
1,295,896	+				+0.7
1,295,933	+				-0.1
1,295,934	-				+0.1
1,295,934	-				+0.9
1,295,946	+				+0.2
1,295,946	+				-0.5
1,295,946	+				+0.5
1,295,947	-				+1.1
1,295,947	-				-0.5
1,295,947	-				-0.1
1,295,947	-				+0.3
1,295,947	-				-0.3
1,295,969	+				-0.8
1,295,969	+				-0.6
1,295,970	-				-0.0
1,295,970	-				-0.2
1,296,010	+				+1.5
1,296,010	+				-1.2
1,296,010	+				+0.5
1,296,011	-				-0.2
1,296,011	-				+0.5
1,296,057	+				+0.1
1,296,057	+				-0.9
1,296,057	+				+0.2
1,296,057	+				-0.0
1,296,058	-				-0.6
1,296,088	-		GFF4365	0.16	-0.3
1,296,088	-		GFF4365	0.16	-0.8
1,296,152	+		GFF4365	0.30	-0.1
1,296,153	-		GFF4365	0.30	-0.2
1,296,204	+		GFF4365	0.41	-1.2
1,296,205	-		GFF4365	0.41	+1.3
1,296,218	-		GFF4365	0.44	-0.2
1,296,240	+		GFF4365	0.49	-2.0
1,296,240	+		GFF4365	0.49	+0.4
1,296,315	+		GFF4365	0.65	+0.3
1,296,316	-		GFF4365	0.65	-0.0
1,296,316	-		GFF4365	0.65	-0.0
1,296,341	+		GFF4365	0.70	-0.3
1,296,341	+		GFF4365	0.70	+0.2
1,296,342	-		GFF4365	0.71	+1.3
1,296,342	-		GFF4365	0.71	-1.9
1,296,376	-		GFF4365	0.78	+0.6
1,296,376	-		GFF4365	0.78	-0.1
1,296,376	-		GFF4365	0.78	-0.0
1,296,480	+				+0.6
1,296,481	-				+0.3
1,296,481	-				+0.6
1,296,492	+				-0.5
1,296,492	+				-2.4
1,296,507	+				+0.5
1,296,507	+				-1.1
1,296,507	+				-0.1
1,296,507	+				+0.1
1,296,507	+				+0.2
1,296,507	+				-0.3
1,296,507	+				+0.2
1,296,508	-				-1.1
1,296,508	-				+0.5
1,296,508	-				+1.1
1,296,582	-		GFF4366	0.37	-0.3
1,296,729	+				+0.4
1,296,729	+				+0.5
1,296,761	+				+2.7
1,296,762	-				-0.8
1,296,762	-				+2.3
1,296,891	+				-0.8
1,297,309	+				+0.0
1,297,333	+				-0.5
1,297,365	+				+0.1
1,297,365	+				-0.1
1,297,365	+				+0.1
1,297,366	-				-0.3
1,297,366	-				-0.8
1,297,366	-				+0.5
1,297,366	-				-1.4
1,297,391	+				-0.6