Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF415 and GFF416 are separated by 2 nucleotides GFF416 and GFF417 are separated by 7 nucleotides
GFF415 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 85,203 to 86,411
GFF415
GFF416 - TesB-like acyl-CoA thioesterase 2, at 86,414 to 87,229
GFF416
GFF417 - putative patatin-like phospholipase, at 87,237 to 89,507
GFF417
Position (kb) 86
87
88 Strain fitness (log2 ratio) -2
-1
0
1
2 at 85.653 kb on + strand, within GFF415 at 86.065 kb on - strand, within GFF415 at 86.065 kb on - strand, within GFF415 at 86.065 kb on - strand, within GFF415 at 86.065 kb on - strand, within GFF415 at 86.347 kb on - strand at 86.347 kb on - strand at 86.347 kb on - strand at 86.466 kb on - strand at 86.598 kb on - strand, within GFF416 at 86.725 kb on + strand, within GFF416 at 86.856 kb on - strand, within GFF416 at 86.856 kb on - strand, within GFF416 at 86.856 kb on - strand, within GFF416 at 86.856 kb on - strand, within GFF416 at 86.996 kb on + strand, within GFF416 at 86.996 kb on + strand, within GFF416 at 87.059 kb on + strand, within GFF416 at 87.059 kb on + strand, within GFF416 at 87.060 kb on - strand, within GFF416 at 87.060 kb on - strand, within GFF416 at 87.219 kb on - strand at 87.219 kb on - strand at 87.259 kb on + strand at 87.259 kb on + strand at 87.259 kb on + strand at 87.260 kb on - strand at 87.260 kb on - strand at 87.260 kb on - strand at 87.271 kb on + strand at 87.301 kb on + strand at 87.464 kb on - strand, within GFF417 at 87.466 kb on + strand, within GFF417 at 87.466 kb on + strand, within GFF417 at 87.466 kb on + strand, within GFF417 at 87.466 kb on + strand, within GFF417 at 87.466 kb on + strand, within GFF417 at 87.467 kb on - strand, within GFF417 at 87.467 kb on - strand, within GFF417 at 87.467 kb on - strand, within GFF417 at 87.467 kb on - strand, within GFF417 at 87.467 kb on - strand, within GFF417 at 87.467 kb on - strand, within GFF417 at 87.490 kb on + strand, within GFF417 at 87.490 kb on + strand, within GFF417 at 87.490 kb on + strand, within GFF417 at 87.491 kb on - strand, within GFF417 at 87.491 kb on - strand, within GFF417 at 87.491 kb on - strand, within GFF417 at 87.491 kb on - strand, within GFF417 at 87.550 kb on + strand, within GFF417 at 87.751 kb on + strand, within GFF417 at 87.751 kb on + strand, within GFF417 at 87.752 kb on - strand, within GFF417 at 88.022 kb on - strand, within GFF417 at 88.063 kb on + strand, within GFF417 at 88.063 kb on + strand, within GFF417 at 88.063 kb on + strand, within GFF417 at 88.063 kb on + strand, within GFF417 at 88.063 kb on + strand, within GFF417 at 88.063 kb on + strand, within GFF417 at 88.075 kb on + strand, within GFF417 at 88.075 kb on + strand, within GFF417 at 88.219 kb on + strand, within GFF417 at 88.219 kb on + strand, within GFF417 at 88.220 kb on - strand, within GFF417
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 85,653 + GFF415 0.37 +0.1 86,065 - GFF415 0.71 -1.0 86,065 - GFF415 0.71 -0.4 86,065 - GFF415 0.71 +0.4 86,065 - GFF415 0.71 -0.2 86,347 - -0.4 86,347 - +0.3 86,347 - -0.8 86,466 - -0.5 86,598 - GFF416 0.23 -0.8 86,725 + GFF416 0.38 -0.0 86,856 - GFF416 0.54 +0.1 86,856 - GFF416 0.54 -0.0 86,856 - GFF416 0.54 -0.3 86,856 - GFF416 0.54 +1.0 86,996 + GFF416 0.71 +0.5 86,996 + GFF416 0.71 -1.3 87,059 + GFF416 0.79 -0.2 87,059 + GFF416 0.79 -0.4 87,060 - GFF416 0.79 -1.9 87,060 - GFF416 0.79 +0.1 87,219 - +0.2 87,219 - -0.9 87,259 + +0.2 87,259 + -0.4 87,259 + +0.2 87,260 - +1.1 87,260 - -0.1 87,260 - +0.2 87,271 + -0.4 87,301 + +0.6 87,464 - GFF417 0.10 +1.0 87,466 + GFF417 0.10 +0.3 87,466 + GFF417 0.10 +0.8 87,466 + GFF417 0.10 +0.3 87,466 + GFF417 0.10 -0.6 87,466 + GFF417 0.10 +0.9 87,467 - GFF417 0.10 -1.1 87,467 - GFF417 0.10 +0.1 87,467 - GFF417 0.10 +0.2 87,467 - GFF417 0.10 -0.4 87,467 - GFF417 0.10 -0.4 87,467 - GFF417 0.10 +0.4 87,490 + GFF417 0.11 -0.4 87,490 + GFF417 0.11 +0.2 87,490 + GFF417 0.11 -0.0 87,491 - GFF417 0.11 -0.2 87,491 - GFF417 0.11 +0.6 87,491 - GFF417 0.11 -0.1 87,491 - GFF417 0.11 +0.1 87,550 + GFF417 0.14 +2.0 87,751 + GFF417 0.23 +0.1 87,751 + GFF417 0.23 -1.0 87,752 - GFF417 0.23 +0.0 88,022 - GFF417 0.35 -0.3 88,063 + GFF417 0.36 +0.2 88,063 + GFF417 0.36 +0.6 88,063 + GFF417 0.36 +0.2 88,063 + GFF417 0.36 -0.6 88,063 + GFF417 0.36 -1.3 88,063 + GFF417 0.36 -0.2 88,075 + GFF417 0.37 +0.0 88,075 + GFF417 0.37 -0.5 88,219 + GFF417 0.43 -0.2 88,219 + GFF417 0.43 +0.9 88,220 - GFF417 0.43 -0.1
Or see this region's nucleotide sequence