Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4038

Experiment: Ying_Nucleobase14 rep A; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4037 and GFF4038 are separated by 103 nucleotidesGFF4038 and GFF4039 are separated by 1 nucleotidesGFF4039 and GFF5790 are separated by 110 nucleotidesGFF5790 and GFF4040 are separated by 76 nucleotides GFF4037 - TRAP transporter solute receptor, TAXI family precursor, at 955,005 to 955,982 GFF4037 GFF4038 - TRAP-type uncharacterized transport system, fused permease component, at 956,086 to 958,668 GFF4038 GFF4039 - Asp/Glu racemase, at 958,670 to 959,317 GFF4039 GFF5790 - tRNA-Leu-TAG, at 959,428 to 959,511 GFF5790 GFF4040 - Cell division trigger factor (EC 5.2.1.8), at 959,588 to 960,898 GFF4040 Position (kb) 956 957 958 959Strain fitness (log2 ratio) -2 -1 0 1at 955.128 kb on + strand, within GFF4037at 955.128 kb on + strand, within GFF4037at 955.129 kb on - strand, within GFF4037at 955.129 kb on - strand, within GFF4037at 955.129 kb on - strand, within GFF4037at 955.129 kb on - strand, within GFF4037at 955.129 kb on - strand, within GFF4037at 955.129 kb on - strand, within GFF4037at 955.129 kb on - strand, within GFF4037at 955.129 kb on - strand, within GFF4037at 955.131 kb on + strand, within GFF4037at 955.131 kb on + strand, within GFF4037at 955.332 kb on + strand, within GFF4037at 955.590 kb on + strand, within GFF4037at 955.590 kb on + strand, within GFF4037at 955.590 kb on + strand, within GFF4037at 955.590 kb on + strand, within GFF4037at 955.591 kb on - strand, within GFF4037at 955.591 kb on - strand, within GFF4037at 955.591 kb on - strand, within GFF4037at 955.594 kb on - strand, within GFF4037at 955.707 kb on + strand, within GFF4037at 955.708 kb on - strand, within GFF4037at 955.768 kb on - strand, within GFF4037at 955.821 kb on + strand, within GFF4037at 955.822 kb on - strand, within GFF4037at 955.822 kb on - strand, within GFF4037at 955.957 kb on - strandat 955.957 kb on - strandat 956.221 kb on + strandat 956.221 kb on + strandat 956.222 kb on - strandat 956.222 kb on - strandat 956.227 kb on + strandat 956.228 kb on - strandat 956.413 kb on + strand, within GFF4038at 956.413 kb on + strand, within GFF4038at 956.413 kb on + strand, within GFF4038at 956.413 kb on + strand, within GFF4038at 956.414 kb on - strand, within GFF4038at 956.414 kb on - strand, within GFF4038at 956.414 kb on - strand, within GFF4038at 956.414 kb on - strand, within GFF4038at 956.414 kb on - strand, within GFF4038at 956.428 kb on + strand, within GFF4038at 956.428 kb on + strand, within GFF4038at 956.429 kb on - strand, within GFF4038at 956.429 kb on - strand, within GFF4038at 956.668 kb on + strand, within GFF4038at 956.669 kb on - strand, within GFF4038at 956.688 kb on - strand, within GFF4038at 956.710 kb on + strand, within GFF4038at 956.711 kb on - strand, within GFF4038at 956.711 kb on - strand, within GFF4038at 956.755 kb on + strand, within GFF4038at 956.755 kb on + strand, within GFF4038at 956.756 kb on - strand, within GFF4038at 956.756 kb on - strand, within GFF4038at 956.756 kb on - strand, within GFF4038at 957.016 kb on + strand, within GFF4038at 957.032 kb on - strand, within GFF4038at 957.077 kb on - strand, within GFF4038at 957.091 kb on + strand, within GFF4038at 957.091 kb on + strand, within GFF4038at 957.091 kb on + strand, within GFF4038at 957.224 kb on - strand, within GFF4038at 957.226 kb on + strand, within GFF4038at 957.226 kb on + strand, within GFF4038at 957.227 kb on - strand, within GFF4038at 957.227 kb on - strand, within GFF4038at 957.301 kb on + strand, within GFF4038at 957.412 kb on + strand, within GFF4038at 957.412 kb on + strand, within GFF4038at 957.413 kb on - strand, within GFF4038at 957.808 kb on + strand, within GFF4038at 957.808 kb on + strand, within GFF4038at 957.808 kb on + strand, within GFF4038at 957.809 kb on - strand, within GFF4038at 957.809 kb on - strand, within GFF4038at 957.809 kb on - strand, within GFF4038at 957.907 kb on + strand, within GFF4038at 957.907 kb on + strand, within GFF4038at 957.907 kb on + strand, within GFF4038at 958.015 kb on + strand, within GFF4038at 958.015 kb on + strand, within GFF4038at 958.015 kb on + strand, within GFF4038at 958.015 kb on + strand, within GFF4038at 958.015 kb on + strand, within GFF4038at 958.015 kb on + strand, within GFF4038at 958.016 kb on - strand, within GFF4038at 958.204 kb on - strand, within GFF4038at 958.265 kb on - strand, within GFF4038at 958.291 kb on + strand, within GFF4038at 958.582 kb on + strandat 958.583 kb on - strandat 958.853 kb on + strand, within GFF4039at 958.854 kb on - strand, within GFF4039at 958.854 kb on - strand, within GFF4039at 958.854 kb on - strand, within GFF4039at 959.348 kb on - strandat 959.395 kb on + strandat 959.421 kb on - strandat 959.462 kb on + strand, within GFF5790at 959.463 kb on - strand, within GFF5790at 959.574 kb on + strandat 959.574 kb on + strandat 959.574 kb on + strandat 959.574 kb on + strandat 959.574 kb on + strandat 959.575 kb on - strandat 959.575 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1
remove
955,128 + GFF4037 0.13 +0.0
955,128 + GFF4037 0.13 +0.4
955,129 - GFF4037 0.13 +0.5
955,129 - GFF4037 0.13 +0.4
955,129 - GFF4037 0.13 -1.5
955,129 - GFF4037 0.13 -0.3
955,129 - GFF4037 0.13 +0.0
955,129 - GFF4037 0.13 -0.2
955,129 - GFF4037 0.13 +0.1
955,129 - GFF4037 0.13 -0.6
955,131 + GFF4037 0.13 -0.0
955,131 + GFF4037 0.13 -0.5
955,332 + GFF4037 0.33 +0.1
955,590 + GFF4037 0.60 +0.2
955,590 + GFF4037 0.60 +0.2
955,590 + GFF4037 0.60 -0.3
955,590 + GFF4037 0.60 -0.3
955,591 - GFF4037 0.60 -0.0
955,591 - GFF4037 0.60 -0.6
955,591 - GFF4037 0.60 +0.3
955,594 - GFF4037 0.60 -0.0
955,707 + GFF4037 0.72 -0.0
955,708 - GFF4037 0.72 +0.5
955,768 - GFF4037 0.78 -0.0
955,821 + GFF4037 0.83 -0.2
955,822 - GFF4037 0.84 -2.2
955,822 - GFF4037 0.84 -0.2
955,957 - +0.1
955,957 - +0.7
956,221 + -0.3
956,221 + -0.3
956,222 - +0.3
956,222 - +0.1
956,227 + -1.0
956,228 - -0.3
956,413 + GFF4038 0.13 -0.3
956,413 + GFF4038 0.13 +0.2
956,413 + GFF4038 0.13 -0.6
956,413 + GFF4038 0.13 -0.5
956,414 - GFF4038 0.13 -1.0
956,414 - GFF4038 0.13 +0.0
956,414 - GFF4038 0.13 -0.9
956,414 - GFF4038 0.13 +0.3
956,414 - GFF4038 0.13 +0.1
956,428 + GFF4038 0.13 -0.2
956,428 + GFF4038 0.13 -0.1
956,429 - GFF4038 0.13 +0.1
956,429 - GFF4038 0.13 -0.1
956,668 + GFF4038 0.23 +0.5
956,669 - GFF4038 0.23 +0.2
956,688 - GFF4038 0.23 -2.0
956,710 + GFF4038 0.24 -0.2
956,711 - GFF4038 0.24 -0.6
956,711 - GFF4038 0.24 -0.3
956,755 + GFF4038 0.26 +0.1
956,755 + GFF4038 0.26 +0.4
956,756 - GFF4038 0.26 +0.3
956,756 - GFF4038 0.26 +0.3
956,756 - GFF4038 0.26 -0.0
957,016 + GFF4038 0.36 -0.6
957,032 - GFF4038 0.37 +0.6
957,077 - GFF4038 0.38 -1.5
957,091 + GFF4038 0.39 -0.6
957,091 + GFF4038 0.39 -0.2
957,091 + GFF4038 0.39 +0.2
957,224 - GFF4038 0.44 -0.1
957,226 + GFF4038 0.44 +0.3
957,226 + GFF4038 0.44 -1.1
957,227 - GFF4038 0.44 -1.3
957,227 - GFF4038 0.44 +0.2
957,301 + GFF4038 0.47 +0.8
957,412 + GFF4038 0.51 +0.8
957,412 + GFF4038 0.51 -0.4
957,413 - GFF4038 0.51 -0.7
957,808 + GFF4038 0.67 -1.8
957,808 + GFF4038 0.67 +1.0
957,808 + GFF4038 0.67 -0.0
957,809 - GFF4038 0.67 -0.6
957,809 - GFF4038 0.67 -0.1
957,809 - GFF4038 0.67 -0.7
957,907 + GFF4038 0.70 -0.2
957,907 + GFF4038 0.70 -1.8
957,907 + GFF4038 0.70 +1.2
958,015 + GFF4038 0.75 -1.3
958,015 + GFF4038 0.75 -0.9
958,015 + GFF4038 0.75 -1.8
958,015 + GFF4038 0.75 +0.3
958,015 + GFF4038 0.75 -0.4
958,015 + GFF4038 0.75 -0.0
958,016 - GFF4038 0.75 +0.0
958,204 - GFF4038 0.82 +0.7
958,265 - GFF4038 0.84 +0.2
958,291 + GFF4038 0.85 +0.1
958,582 + +0.3
958,583 - +0.1
958,853 + GFF4039 0.28 +0.5
958,854 - GFF4039 0.28 -0.0
958,854 - GFF4039 0.28 +0.5
958,854 - GFF4039 0.28 -0.2
959,348 - +0.0
959,395 + -0.4
959,421 - +0.1
959,462 + GFF5790 0.40 -0.4
959,463 - GFF5790 0.42 -0.3
959,574 + -1.0
959,574 + -0.2
959,574 + -0.5
959,574 + +0.1
959,574 + -0.5
959,575 - -2.6
959,575 - +1.0

Or see this region's nucleotide sequence