Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3985 and GFF3986 are separated by 1 nucleotides GFF3986 and GFF3987 overlap by 4 nucleotides
GFF3985 - CobW GTPase involved in cobalt insertion for B12 biosynthesis, at 899,524 to 900,588
GFF3985
GFF3986 - CobN component of cobalt chelatase involved in B12 biosynthesis, at 900,590 to 904,375
GFF3986
GFF3987 - ChlI component of cobalt chelatase involved in B12 biosynthesis, at 904,372 to 905,421
GFF3987
Position (kb) 900
901
902
903
904
905 Strain fitness (log2 ratio) -1
0
1 at 900.377 kb on - strand, within GFF3985 at 900.806 kb on + strand at 900.806 kb on + strand at 900.806 kb on + strand at 900.806 kb on + strand at 900.806 kb on + strand at 900.807 kb on - strand at 900.807 kb on - strand at 900.807 kb on - strand at 900.807 kb on - strand at 900.807 kb on - strand at 900.878 kb on + strand at 900.878 kb on + strand at 900.879 kb on - strand at 901.133 kb on + strand, within GFF3986 at 901.134 kb on - strand, within GFF3986 at 901.194 kb on - strand, within GFF3986 at 901.736 kb on + strand, within GFF3986 at 901.952 kb on + strand, within GFF3986 at 901.952 kb on + strand, within GFF3986 at 902.136 kb on - strand, within GFF3986 at 902.168 kb on + strand, within GFF3986 at 902.181 kb on - strand, within GFF3986 at 902.325 kb on - strand, within GFF3986 at 902.429 kb on + strand, within GFF3986 at 902.430 kb on - strand, within GFF3986 at 902.624 kb on + strand, within GFF3986 at 903.167 kb on + strand, within GFF3986 at 903.167 kb on + strand, within GFF3986 at 903.206 kb on + strand, within GFF3986 at 903.749 kb on + strand, within GFF3986 at 903.749 kb on + strand, within GFF3986 at 903.750 kb on - strand, within GFF3986 at 903.893 kb on + strand, within GFF3986 at 903.893 kb on + strand, within GFF3986 at 903.894 kb on - strand, within GFF3986 at 903.894 kb on - strand, within GFF3986 at 903.894 kb on - strand, within GFF3986 at 903.894 kb on - strand, within GFF3986 at 903.896 kb on + strand, within GFF3986 at 903.896 kb on + strand, within GFF3986 at 903.960 kb on - strand, within GFF3986 at 904.083 kb on - strand at 904.118 kb on + strand at 904.118 kb on + strand at 904.187 kb on + strand at 904.188 kb on - strand at 904.705 kb on + strand, within GFF3987 at 904.705 kb on + strand, within GFF3987 at 904.705 kb on + strand, within GFF3987 at 904.705 kb on + strand, within GFF3987 at 904.706 kb on - strand, within GFF3987
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 900,377 - GFF3985 0.80 -0.4 900,806 + +1.2 900,806 + +0.1 900,806 + +0.3 900,806 + +1.2 900,806 + +0.4 900,807 - -0.8 900,807 - -0.0 900,807 - +0.1 900,807 - -0.1 900,807 - +0.7 900,878 + -0.0 900,878 + +0.9 900,879 - +0.3 901,133 + GFF3986 0.14 -0.0 901,134 - GFF3986 0.14 +0.2 901,194 - GFF3986 0.16 -1.2 901,736 + GFF3986 0.30 -0.0 901,952 + GFF3986 0.36 -1.4 901,952 + GFF3986 0.36 +0.2 902,136 - GFF3986 0.41 -1.2 902,168 + GFF3986 0.42 -0.5 902,181 - GFF3986 0.42 -0.2 902,325 - GFF3986 0.46 +1.4 902,429 + GFF3986 0.49 -0.4 902,430 - GFF3986 0.49 -0.2 902,624 + GFF3986 0.54 -0.1 903,167 + GFF3986 0.68 -0.2 903,167 + GFF3986 0.68 +0.4 903,206 + GFF3986 0.69 +0.3 903,749 + GFF3986 0.83 +0.1 903,749 + GFF3986 0.83 -0.2 903,750 - GFF3986 0.83 +0.1 903,893 + GFF3986 0.87 +0.6 903,893 + GFF3986 0.87 -0.4 903,894 - GFF3986 0.87 -0.4 903,894 - GFF3986 0.87 -1.1 903,894 - GFF3986 0.87 -0.2 903,894 - GFF3986 0.87 +0.1 903,896 + GFF3986 0.87 -1.6 903,896 + GFF3986 0.87 -0.1 903,960 - GFF3986 0.89 +0.2 904,083 - -0.0 904,118 + -0.8 904,118 + -0.2 904,187 + -0.4 904,188 - +0.1 904,705 + GFF3987 0.32 -0.4 904,705 + GFF3987 0.32 +0.8 904,705 + GFF3987 0.32 -0.0 904,705 + GFF3987 0.32 +0.2 904,706 - GFF3987 0.32 -0.1
Or see this region's nucleotide sequence