Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3981 and GFF3982 overlap by 4 nucleotides GFF3982 and GFF3983 are separated by 25 nucleotides GFF3983 and GFF3984 overlap by 1 nucleotides GFF3984 and GFF3985 are separated by 14 nucleotides
GFF3981 - Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1), at 896,319 to 897,323
GFF3981
GFF3982 - Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1), at 897,320 to 898,081
GFF3982
GFF3983 - Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 898,107 to 898,676
GFF3983
GFF3984 - Vitamin B12 ABC transporter, B12-binding component BtuF, at 898,676 to 899,509
GFF3984
GFF3985 - CobW GTPase involved in cobalt insertion for B12 biosynthesis, at 899,524 to 900,588
GFF3985
Position (kb) 898
899 Strain fitness (log2 ratio) -1
0
1
2 at 897.274 kb on - strand at 898.267 kb on - strand, within GFF3983 at 898.267 kb on - strand, within GFF3983 at 898.267 kb on - strand, within GFF3983 at 898.476 kb on + strand, within GFF3983 at 898.476 kb on + strand, within GFF3983 at 898.476 kb on + strand, within GFF3983 at 898.476 kb on + strand, within GFF3983 at 898.476 kb on + strand, within GFF3983 at 899.159 kb on + strand, within GFF3984 at 899.160 kb on - strand, within GFF3984 at 899.160 kb on - strand, within GFF3984 at 899.512 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 897,274 - -1.0 898,267 - GFF3983 0.28 +0.2 898,267 - GFF3983 0.28 -0.5 898,267 - GFF3983 0.28 -0.2 898,476 + GFF3983 0.65 -0.7 898,476 + GFF3983 0.65 -0.6 898,476 + GFF3983 0.65 -0.6 898,476 + GFF3983 0.65 -0.7 898,476 + GFF3983 0.65 +1.8 899,159 + GFF3984 0.58 +0.8 899,160 - GFF3984 0.58 -0.0 899,160 - GFF3984 0.58 +0.1 899,512 - +0.8
Or see this region's nucleotide sequence