Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF371

Experiment: Ying_Nucleobase14 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 1
33,319	+		GFF370	0.45	-3.8
33,430	+		GFF370	0.52	-1.4
33,430	+		GFF370	0.52	-1.6
33,430	+		GFF370	0.52	-1.5
33,431	-		GFF370	0.52	+0.6
33,431	-		GFF370	0.52	-2.8
33,431	-		GFF370	0.52	-2.7
33,431	-		GFF370	0.52	-2.3
33,487	+		GFF370	0.56	+0.6
33,496	+		GFF370	0.57	-1.0
33,496	+		GFF370	0.57	-2.1
33,497	-		GFF370	0.57	-2.2
33,497	-		GFF370	0.57	-1.8
33,547	+		GFF370	0.60	-1.7
33,548	-		GFF370	0.60	-1.2
33,572	-		GFF370	0.62	-2.3
33,838	+		GFF370	0.79	-1.4
33,838	+		GFF370	0.79	+0.1
33,839	-		GFF370	0.79	-1.2
33,841	+		GFF370	0.80	-3.5
33,841	+		GFF370	0.80	-2.4
33,841	+		GFF370	0.80	-1.0
33,842	-		GFF370	0.80	-2.9
33,842	-		GFF370	0.80	-2.9
33,842	-		GFF370	0.80	-1.7
33,851	-		GFF370	0.80	-1.9
33,907	+		GFF370	0.84	-2.3
33,908	-		GFF370	0.84	-2.1
33,976	+		GFF370	0.88	-2.8
33,976	+		GFF370	0.88	-2.6
33,976	+		GFF370	0.88	-0.7
33,977	-		GFF370	0.89	-2.6
33,983	-		GFF370	0.89	-2.7
34,069	+				-0.7
34,069	+				-3.1
34,070	-				-1.7
34,070	-				-3.6
34,070	-				-0.8
34,129	+				-1.3
34,130	-				-1.2
34,153	+				-2.3
34,153	+				-1.9
34,154	-				-1.2
34,456	+		GFF371	0.19	+1.2
34,457	-		GFF371	0.19	+1.1
34,516	+		GFF371	0.24	+1.6
34,516	+		GFF371	0.24	+0.4
34,516	+		GFF371	0.24	+1.3
36,096	-		GFF372	0.43	+0.1
36,096	-		GFF372	0.43	+1.2