Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3619

Experiment: Ying_Nucleobase14 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 1
505,886	+				-0.5
505,887	+				-0.3
505,887	+				+0.4
505,887	+				+0.1
505,888	-				-0.8
505,888	-				-0.1
506,312	+		GFF3618	0.45	+0.5
506,313	-		GFF3618	0.45	+0.3
506,531	+		GFF3618	0.71	+0.3
506,742	-				+0.1
507,226	+		GFF3619	0.42	-0.3
507,226	+		GFF3619	0.42	+0.6
507,227	-		GFF3619	0.42	-0.7
507,451	+		GFF3619	0.64	+0.3
507,452	-		GFF3619	0.65	-0.0
507,452	-		GFF3619	0.65	-0.5
507,452	-		GFF3619	0.65	-1.3
508,343	+		GFF3620	0.56	-1.4
508,344	-		GFF3620	0.57	+0.0
508,521	-		GFF3620	0.77	-0.7
508,521	-		GFF3620	0.77	+0.7