Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3537 and GFF3538 are separated by 23 nucleotides GFF3538 and GFF3539 are separated by 11 nucleotides GFF3539 and GFF3540 are separated by 1 nucleotides
GFF3537 - CopG protein, at 428,387 to 429,115
GFF3537
GFF3538 - Copper tolerance protein, at 429,139 to 429,654
GFF3538
GFF3539 - Multicopper oxidase, at 429,666 to 431,078
GFF3539
GFF3540 - Copper tolerance protein, at 431,080 to 432,456
GFF3540
Position (kb) 429
430
431
432 Strain fitness (log2 ratio) -2
-1
0
1 at 428.718 kb on + strand, within GFF3537 at 428.719 kb on - strand, within GFF3537 at 428.719 kb on - strand, within GFF3537 at 428.739 kb on + strand, within GFF3537 at 428.739 kb on + strand, within GFF3537 at 428.740 kb on - strand, within GFF3537 at 428.895 kb on + strand, within GFF3537 at 429.281 kb on + strand, within GFF3538 at 429.281 kb on + strand, within GFF3538 at 429.281 kb on + strand, within GFF3538 at 429.812 kb on - strand, within GFF3539 at 429.830 kb on - strand, within GFF3539 at 429.993 kb on - strand, within GFF3539 at 429.994 kb on + strand, within GFF3539 at 429.995 kb on - strand, within GFF3539 at 430.440 kb on + strand, within GFF3539 at 430.552 kb on + strand, within GFF3539 at 430.552 kb on + strand, within GFF3539 at 430.553 kb on - strand, within GFF3539 at 430.553 kb on - strand, within GFF3539 at 430.553 kb on - strand, within GFF3539 at 430.589 kb on - strand, within GFF3539 at 430.711 kb on + strand, within GFF3539 at 430.711 kb on + strand, within GFF3539 at 430.712 kb on - strand, within GFF3539 at 430.771 kb on + strand, within GFF3539 at 430.771 kb on + strand, within GFF3539 at 430.771 kb on + strand, within GFF3539 at 430.904 kb on - strand, within GFF3539 at 430.904 kb on - strand, within GFF3539 at 430.904 kb on - strand, within GFF3539 at 431.192 kb on + strand at 431.192 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 428,718 + GFF3537 0.45 -0.4 428,719 - GFF3537 0.46 -0.5 428,719 - GFF3537 0.46 +0.2 428,739 + GFF3537 0.48 +0.1 428,739 + GFF3537 0.48 +1.1 428,740 - GFF3537 0.48 -0.5 428,895 + GFF3537 0.70 +0.4 429,281 + GFF3538 0.28 -1.0 429,281 + GFF3538 0.28 -1.2 429,281 + GFF3538 0.28 +0.3 429,812 - GFF3539 0.10 -2.6 429,830 - GFF3539 0.12 +0.0 429,993 - GFF3539 0.23 +0.0 429,994 + GFF3539 0.23 -0.0 429,995 - GFF3539 0.23 -0.3 430,440 + GFF3539 0.55 -0.0 430,552 + GFF3539 0.63 -0.2 430,552 + GFF3539 0.63 -1.0 430,553 - GFF3539 0.63 -0.0 430,553 - GFF3539 0.63 +0.3 430,553 - GFF3539 0.63 -0.8 430,589 - GFF3539 0.65 +0.6 430,711 + GFF3539 0.74 -0.4 430,711 + GFF3539 0.74 +0.5 430,712 - GFF3539 0.74 +0.1 430,771 + GFF3539 0.78 +0.5 430,771 + GFF3539 0.78 +0.2 430,771 + GFF3539 0.78 -0.7 430,904 - GFF3539 0.88 -0.6 430,904 - GFF3539 0.88 +0.0 430,904 - GFF3539 0.88 +0.1 431,192 + +0.3 431,192 + +0.5
Or see this region's nucleotide sequence