Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3475 and GFF3476 overlap by 4 nucleotides GFF3476 and GFF3477 are separated by 17 nucleotides GFF3477 and GFF3478 are separated by 2 nucleotides
GFF3475 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 356,663 to 357,430
GFF3475
GFF3476 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 357,427 to 358,143
GFF3476
GFF3477 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 358,161 to 359,033
GFF3477
GFF3478 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 359,036 to 360,040
GFF3478
Position (kb) 358
359
360 Strain fitness (log2 ratio) -1
0
1
2 at 357.677 kb on + strand, within GFF3476 at 357.678 kb on - strand, within GFF3476 at 358.052 kb on - strand, within GFF3476 at 358.142 kb on - strand at 358.142 kb on - strand at 358.212 kb on + strand at 358.212 kb on + strand at 358.212 kb on + strand at 358.213 kb on - strand at 358.242 kb on - strand at 358.245 kb on + strand at 358.246 kb on - strand at 358.302 kb on + strand, within GFF3477 at 358.479 kb on - strand, within GFF3477 at 358.923 kb on + strand, within GFF3477 at 358.924 kb on - strand, within GFF3477 at 358.924 kb on - strand, within GFF3477 at 359.154 kb on - strand, within GFF3478 at 359.154 kb on - strand, within GFF3478 at 359.162 kb on + strand, within GFF3478 at 359.162 kb on + strand, within GFF3478 at 359.163 kb on - strand, within GFF3478 at 359.163 kb on - strand, within GFF3478 at 359.318 kb on + strand, within GFF3478 at 359.402 kb on + strand, within GFF3478 at 359.402 kb on + strand, within GFF3478 at 359.434 kb on - strand, within GFF3478 at 359.821 kb on + strand, within GFF3478 at 359.965 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 357,677 + GFF3476 0.35 +0.1 357,678 - GFF3476 0.35 +0.0 358,052 - GFF3476 0.87 -0.5 358,142 - -0.5 358,142 - +0.2 358,212 + +0.4 358,212 + +0.1 358,212 + +0.5 358,213 - -0.9 358,242 - +0.8 358,245 + -0.2 358,246 - +0.1 358,302 + GFF3477 0.16 +0.2 358,479 - GFF3477 0.36 +0.4 358,923 + GFF3477 0.87 +0.3 358,924 - GFF3477 0.87 -0.4 358,924 - GFF3477 0.87 +2.4 359,154 - GFF3478 0.12 +0.3 359,154 - GFF3478 0.12 +0.3 359,162 + GFF3478 0.13 -1.3 359,162 + GFF3478 0.13 +0.1 359,163 - GFF3478 0.13 +0.4 359,163 - GFF3478 0.13 -0.6 359,318 + GFF3478 0.28 +0.2 359,402 + GFF3478 0.36 +0.3 359,402 + GFF3478 0.36 -0.7 359,434 - GFF3478 0.40 +0.1 359,821 + GFF3478 0.78 -0.1 359,965 - +0.6
Or see this region's nucleotide sequence