Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3446 and GFF3447 are separated by 149 nucleotides GFF3447 and GFF3448 are separated by 13 nucleotides GFF3448 and GFF3449 are separated by 18 nucleotides GFF3449 and GFF3450 overlap by 4 nucleotides
GFF3446 - Conjugative transfer protein TrbG, at 326,821 to 327,681
GFF3446
GFF3447 - Conjugative transfer protein TrbF, at 327,831 to 328,535
GFF3447
GFF3448 - Conjugative transfer protein TrbL, at 328,549 to 329,919
GFF3448
GFF3449 - Conjugative transfer protein TrbJ, at 329,938 to 330,720
GFF3449
GFF3450 - Conjugative transfer protein TrbE, at 330,717 to 333,164
GFF3450
Position (kb) 328
329
330 Strain fitness (log2 ratio) -1
0
1 at 327.793 kb on + strand at 327.890 kb on - strand at 327.890 kb on - strand at 327.998 kb on - strand, within GFF3447 at 328.114 kb on + strand, within GFF3447 at 328.150 kb on + strand, within GFF3447 at 328.151 kb on - strand, within GFF3447 at 328.157 kb on - strand, within GFF3447 at 328.324 kb on + strand, within GFF3447 at 328.324 kb on + strand, within GFF3447 at 328.324 kb on + strand, within GFF3447 at 328.325 kb on - strand, within GFF3447 at 328.325 kb on - strand, within GFF3447 at 328.325 kb on - strand, within GFF3447 at 328.326 kb on - strand, within GFF3447 at 328.820 kb on - strand, within GFF3448 at 329.635 kb on + strand, within GFF3448 at 329.711 kb on + strand, within GFF3448 at 329.712 kb on - strand, within GFF3448 at 329.948 kb on + strand at 329.948 kb on + strand at 330.338 kb on + strand, within GFF3449
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 327,793 + +0.2 327,890 - +1.1 327,890 - +0.1 327,998 - GFF3447 0.24 +0.0 328,114 + GFF3447 0.40 +0.3 328,150 + GFF3447 0.45 -0.4 328,151 - GFF3447 0.45 -0.2 328,157 - GFF3447 0.46 -0.0 328,324 + GFF3447 0.70 -0.3 328,324 + GFF3447 0.70 -0.0 328,324 + GFF3447 0.70 +0.1 328,325 - GFF3447 0.70 -0.0 328,325 - GFF3447 0.70 +0.6 328,325 - GFF3447 0.70 +1.1 328,326 - GFF3447 0.70 +0.1 328,820 - GFF3448 0.20 +0.2 329,635 + GFF3448 0.79 -0.2 329,711 + GFF3448 0.85 -0.2 329,712 - GFF3448 0.85 -1.4 329,948 + -0.9 329,948 + +0.8 330,338 + GFF3449 0.51 -0.4
Or see this region's nucleotide sequence