Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3389

Experiment: Ying_Nucleobase14 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3388 and GFF3389 are separated by 24 nucleotidesGFF3389 and GFF3390 are separated by 76 nucleotides GFF3388 - Putative n-hydroxybenzoate hydroxylase, at 272,255 to 273,451 GFF3388 GFF3389 - putative exported protein, at 273,476 to 274,465 GFF3389 GFF3390 - Glucans biosynthesis protein C (EC 2.1.-.-), at 274,542 to 275,717 GFF3390 Position (kb) 273 274 275Strain fitness (log2 ratio) -1 0 1 2at 273.821 kb on + strand, within GFF3389at 273.821 kb on + strand, within GFF3389at 273.821 kb on + strand, within GFF3389at 273.822 kb on - strand, within GFF3389at 273.822 kb on - strand, within GFF3389at 273.822 kb on - strand, within GFF3389at 273.822 kb on - strand, within GFF3389at 273.822 kb on - strand, within GFF3389at 273.822 kb on - strand, within GFF3389at 273.822 kb on - strand, within GFF3389at 273.918 kb on - strand, within GFF3389at 273.956 kb on + strand, within GFF3389at 273.956 kb on + strand, within GFF3389at 273.956 kb on + strand, within GFF3389at 274.527 kb on + strandat 274.527 kb on + strandat 274.527 kb on + strandat 274.651 kb on - strandat 275.151 kb on + strand, within GFF3390at 275.152 kb on - strand, within GFF3390at 275.152 kb on - strand, within GFF3390at 275.214 kb on + strand, within GFF3390at 275.223 kb on + strand, within GFF3390at 275.224 kb on - strand, within GFF3390at 275.377 kb on - strand, within GFF3390

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1
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273,821 + GFF3389 0.35 +1.0
273,821 + GFF3389 0.35 -0.1
273,821 + GFF3389 0.35 -0.2
273,822 - GFF3389 0.35 -0.1
273,822 - GFF3389 0.35 -0.7
273,822 - GFF3389 0.35 -0.1
273,822 - GFF3389 0.35 -0.2
273,822 - GFF3389 0.35 +0.5
273,822 - GFF3389 0.35 -0.1
273,822 - GFF3389 0.35 -0.1
273,918 - GFF3389 0.45 +1.7
273,956 + GFF3389 0.48 +0.2
273,956 + GFF3389 0.48 +0.2
273,956 + GFF3389 0.48 +0.1
274,527 + +2.4
274,527 + +0.1
274,527 + -0.0
274,651 - +0.2
275,151 + GFF3390 0.52 -1.1
275,152 - GFF3390 0.52 -1.0
275,152 - GFF3390 0.52 -1.4
275,214 + GFF3390 0.57 -0.5
275,223 + GFF3390 0.58 -0.4
275,224 - GFF3390 0.58 -0.4
275,377 - GFF3390 0.71 -0.3

Or see this region's nucleotide sequence