Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3242 and GFF3243 are separated by 309 nucleotides
GFF3242 - hypothetical protein, at 124,924 to 125,175
GFF3242
GFF3243 - Catalase (EC 1.11.1.6), at 125,485 to 127,014
GFF3243
Position (kb) 124
125
126 Strain fitness (log2 ratio) -1
0
1
2 at 123.974 kb on + strand at 124.172 kb on + strand at 124.172 kb on + strand at 124.173 kb on - strand at 124.173 kb on - strand at 124.173 kb on - strand at 124.298 kb on + strand at 124.299 kb on - strand at 124.373 kb on + strand at 124.512 kb on - strand at 124.659 kb on + strand at 124.659 kb on + strand at 124.659 kb on + strand at 124.660 kb on - strand at 124.662 kb on - strand at 124.665 kb on + strand at 124.666 kb on - strand at 124.666 kb on - strand at 124.815 kb on - strand at 124.840 kb on + strand at 124.890 kb on - strand at 124.890 kb on - strand at 124.912 kb on + strand at 124.912 kb on + strand at 124.994 kb on + strand, within GFF3242 at 125.045 kb on + strand, within GFF3242 at 125.045 kb on + strand, within GFF3242 at 125.046 kb on - strand, within GFF3242 at 125.121 kb on - strand, within GFF3242 at 125.412 kb on + strand at 125.413 kb on - strand at 125.468 kb on + strand at 125.468 kb on + strand at 125.469 kb on - strand at 125.469 kb on - strand at 125.591 kb on + strand at 125.592 kb on - strand at 125.738 kb on + strand, within GFF3243 at 125.739 kb on - strand, within GFF3243 at 125.759 kb on + strand, within GFF3243 at 125.849 kb on + strand, within GFF3243 at 125.850 kb on - strand, within GFF3243 at 125.867 kb on + strand, within GFF3243 at 125.878 kb on + strand, within GFF3243 at 125.878 kb on + strand, within GFF3243 at 125.984 kb on + strand, within GFF3243 at 125.984 kb on + strand, within GFF3243 at 125.984 kb on + strand, within GFF3243 at 125.985 kb on - strand, within GFF3243 at 125.989 kb on - strand, within GFF3243 at 125.989 kb on - strand, within GFF3243 at 126.146 kb on + strand, within GFF3243 at 126.146 kb on + strand, within GFF3243 at 126.147 kb on - strand, within GFF3243
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 123,974 + +0.3 124,172 + -0.8 124,172 + -0.0 124,173 - +0.1 124,173 - +1.0 124,173 - +1.3 124,298 + +0.2 124,299 - -0.2 124,373 + +0.2 124,512 - +0.2 124,659 + -0.1 124,659 + +0.2 124,659 + -1.5 124,660 - +0.0 124,662 - +0.0 124,665 + +0.3 124,666 - +0.0 124,666 - -0.5 124,815 - +0.2 124,840 + +0.9 124,890 - +0.4 124,890 - +0.3 124,912 + -1.2 124,912 + +0.3 124,994 + GFF3242 0.28 +0.5 125,045 + GFF3242 0.48 +0.2 125,045 + GFF3242 0.48 -0.2 125,046 - GFF3242 0.48 +0.1 125,121 - GFF3242 0.78 +2.1 125,412 + -1.0 125,413 - -0.4 125,468 + -0.8 125,468 + +0.1 125,469 - +0.6 125,469 - +0.3 125,591 + +0.8 125,592 - +1.6 125,738 + GFF3243 0.17 +0.0 125,739 - GFF3243 0.17 +0.1 125,759 + GFF3243 0.18 -0.3 125,849 + GFF3243 0.24 +0.1 125,850 - GFF3243 0.24 -0.2 125,867 + GFF3243 0.25 +0.3 125,878 + GFF3243 0.26 +0.3 125,878 + GFF3243 0.26 +0.8 125,984 + GFF3243 0.33 -0.7 125,984 + GFF3243 0.33 -0.0 125,984 + GFF3243 0.33 +0.7 125,985 - GFF3243 0.33 +0.4 125,989 - GFF3243 0.33 -0.0 125,989 - GFF3243 0.33 +0.6 126,146 + GFF3243 0.43 +0.6 126,146 + GFF3243 0.43 +1.0 126,147 - GFF3243 0.43 -1.6
Or see this region's nucleotide sequence