Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3023 and GFF3024 are separated by 64 nucleotides GFF3024 and GFF3025 are separated by 5 nucleotides
GFF3023 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 99,751 to 100,776
GFF3023
GFF3024 - Glutamine amidotransferase, class-II, at 100,841 to 101,605
GFF3024
GFF3025 - Multidrug resistance protein B, at 101,611 to 103,116
GFF3025
Position (kb) 100
101
102 Strain fitness (log2 ratio) -2
-1
0
1 at 99.941 kb on + strand, within GFF3023 at 99.942 kb on - strand, within GFF3023 at 99.965 kb on + strand, within GFF3023 at 99.965 kb on + strand, within GFF3023 at 100.619 kb on + strand, within GFF3023 at 100.620 kb on - strand, within GFF3023 at 100.653 kb on - strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.656 kb on - strand, within GFF3023 at 100.656 kb on - strand, within GFF3023 at 100.656 kb on - strand, within GFF3023 at 100.656 kb on - strand, within GFF3023 at 100.656 kb on - strand, within GFF3023 at 101.265 kb on + strand, within GFF3024 at 101.265 kb on + strand, within GFF3024 at 101.266 kb on - strand, within GFF3024 at 101.612 kb on + strand at 101.613 kb on - strand at 102.170 kb on + strand, within GFF3025 at 102.170 kb on + strand, within GFF3025 at 102.170 kb on + strand, within GFF3025 at 102.170 kb on + strand, within GFF3025 at 102.171 kb on - strand, within GFF3025 at 102.171 kb on - strand, within GFF3025 at 102.171 kb on - strand, within GFF3025 at 102.185 kb on + strand, within GFF3025 at 102.185 kb on + strand, within GFF3025 at 102.185 kb on + strand, within GFF3025 at 102.185 kb on + strand, within GFF3025 at 102.186 kb on - strand, within GFF3025 at 102.186 kb on - strand, within GFF3025 at 102.186 kb on - strand, within GFF3025 at 102.212 kb on + strand, within GFF3025 at 102.212 kb on + strand, within GFF3025 at 102.213 kb on - strand, within GFF3025 at 102.213 kb on - strand, within GFF3025 at 102.213 kb on - strand, within GFF3025 at 102.213 kb on - strand, within GFF3025
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 99,941 + GFF3023 0.19 -2.0 99,942 - GFF3023 0.19 +0.4 99,965 + GFF3023 0.21 +0.0 99,965 + GFF3023 0.21 -0.3 100,619 + GFF3023 0.85 -0.7 100,620 - GFF3023 0.85 +0.1 100,653 - GFF3023 0.88 +1.3 100,655 + GFF3023 0.88 +0.0 100,655 + GFF3023 0.88 +0.3 100,655 + GFF3023 0.88 -0.2 100,655 + GFF3023 0.88 -0.6 100,655 + GFF3023 0.88 -0.7 100,655 + GFF3023 0.88 -0.1 100,655 + GFF3023 0.88 +0.7 100,656 - GFF3023 0.88 +0.5 100,656 - GFF3023 0.88 -0.3 100,656 - GFF3023 0.88 +0.5 100,656 - GFF3023 0.88 +0.1 100,656 - GFF3023 0.88 -0.3 101,265 + GFF3024 0.55 -1.3 101,265 + GFF3024 0.55 -0.1 101,266 - GFF3024 0.56 -0.7 101,612 + -0.1 101,613 - +0.2 102,170 + GFF3025 0.37 +0.8 102,170 + GFF3025 0.37 -0.2 102,170 + GFF3025 0.37 -0.4 102,170 + GFF3025 0.37 -1.4 102,171 - GFF3025 0.37 -0.2 102,171 - GFF3025 0.37 +0.1 102,171 - GFF3025 0.37 +0.2 102,185 + GFF3025 0.38 +0.1 102,185 + GFF3025 0.38 -0.4 102,185 + GFF3025 0.38 -0.4 102,185 + GFF3025 0.38 -0.2 102,186 - GFF3025 0.38 -0.2 102,186 - GFF3025 0.38 +0.2 102,186 - GFF3025 0.38 -0.2 102,212 + GFF3025 0.40 -0.1 102,212 + GFF3025 0.40 -0.1 102,213 - GFF3025 0.40 +0.5 102,213 - GFF3025 0.40 +0.5 102,213 - GFF3025 0.40 +0.3 102,213 - GFF3025 0.40 -0.7
Or see this region's nucleotide sequence