Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2990 and GFF2991 overlap by 4 nucleotides GFF2991 and GFF2992 overlap by 4 nucleotides GFF2992 and GFF2993 are separated by 16 nucleotides GFF2993 and GFF2994 are separated by 135 nucleotides
GFF2990 - chlorohydrolase family protein, at 70,005 to 71,372
GFF2990
GFF2991 - Hydantoin racemase (EC 5.1.99.-), at 71,369 to 72,115
GFF2991
GFF2992 - D-hydantoinase (EC 3.5.2.2), at 72,112 to 73,542
GFF2992
GFF2993 - bll1134; hypothetical protein, at 73,559 to 74,047
GFF2993
GFF2994 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 74,183 to 75,727
GFF2994
Position (kb) 72
73
74 Strain fitness (log2 ratio) -2
-1
0
1
2 at 71.495 kb on + strand, within GFF2991 at 71.496 kb on - strand, within GFF2991 at 71.496 kb on - strand, within GFF2991 at 71.496 kb on - strand, within GFF2991 at 71.496 kb on - strand, within GFF2991 at 71.531 kb on + strand, within GFF2991 at 71.531 kb on + strand, within GFF2991 at 71.531 kb on + strand, within GFF2991 at 71.735 kb on + strand, within GFF2991 at 71.735 kb on + strand, within GFF2991 at 71.736 kb on - strand, within GFF2991 at 72.445 kb on + strand, within GFF2992 at 72.445 kb on + strand, within GFF2992 at 72.445 kb on + strand, within GFF2992 at 72.446 kb on - strand, within GFF2992 at 72.559 kb on + strand, within GFF2992 at 72.559 kb on + strand, within GFF2992 at 72.561 kb on + strand, within GFF2992 at 72.561 kb on + strand, within GFF2992 at 72.562 kb on - strand, within GFF2992 at 72.562 kb on - strand, within GFF2992 at 72.562 kb on - strand, within GFF2992 at 72.562 kb on - strand, within GFF2992 at 72.577 kb on + strand, within GFF2992 at 72.578 kb on - strand, within GFF2992 at 72.578 kb on - strand, within GFF2992 at 72.919 kb on + strand, within GFF2992 at 72.919 kb on + strand, within GFF2992 at 72.920 kb on - strand, within GFF2992 at 72.920 kb on - strand, within GFF2992 at 72.961 kb on + strand, within GFF2992 at 72.961 kb on + strand, within GFF2992 at 72.961 kb on + strand, within GFF2992 at 72.961 kb on + strand, within GFF2992 at 72.961 kb on + strand, within GFF2992 at 72.962 kb on - strand, within GFF2992 at 72.962 kb on - strand, within GFF2992 at 72.962 kb on - strand, within GFF2992 at 72.962 kb on - strand, within GFF2992 at 72.962 kb on - strand, within GFF2992 at 73.183 kb on + strand, within GFF2992 at 73.183 kb on + strand, within GFF2992 at 73.184 kb on - strand, within GFF2992 at 73.262 kb on - strand, within GFF2992 at 73.375 kb on + strand, within GFF2992 at 73.376 kb on - strand, within GFF2992 at 73.376 kb on - strand, within GFF2992 at 73.384 kb on + strand, within GFF2992 at 73.385 kb on - strand, within GFF2992 at 73.443 kb on - strand at 73.487 kb on - strand at 73.540 kb on + strand at 73.541 kb on - strand at 73.560 kb on + strand at 73.560 kb on + strand at 73.561 kb on - strand at 73.563 kb on + strand at 73.564 kb on - strand at 73.564 kb on - strand at 73.677 kb on + strand, within GFF2993 at 73.678 kb on - strand, within GFF2993 at 73.678 kb on - strand, within GFF2993 at 73.812 kb on + strand, within GFF2993 at 73.812 kb on + strand, within GFF2993 at 73.813 kb on - strand, within GFF2993 at 73.813 kb on - strand, within GFF2993 at 73.813 kb on - strand, within GFF2993 at 73.813 kb on - strand, within GFF2993 at 73.968 kb on + strand, within GFF2993 at 74.163 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 71,495 + GFF2991 0.17 -0.1 71,496 - GFF2991 0.17 -0.5 71,496 - GFF2991 0.17 +0.1 71,496 - GFF2991 0.17 -0.7 71,496 - GFF2991 0.17 +0.0 71,531 + GFF2991 0.22 -0.1 71,531 + GFF2991 0.22 -0.7 71,531 + GFF2991 0.22 +0.9 71,735 + GFF2991 0.49 -1.4 71,735 + GFF2991 0.49 -0.3 71,736 - GFF2991 0.49 +0.3 72,445 + GFF2992 0.23 -0.9 72,445 + GFF2992 0.23 -1.4 72,445 + GFF2992 0.23 +0.5 72,446 - GFF2992 0.23 -0.3 72,559 + GFF2992 0.31 -0.3 72,559 + GFF2992 0.31 +0.8 72,561 + GFF2992 0.31 +0.6 72,561 + GFF2992 0.31 +0.2 72,562 - GFF2992 0.31 +0.3 72,562 - GFF2992 0.31 -0.0 72,562 - GFF2992 0.31 -0.4 72,562 - GFF2992 0.31 +0.3 72,577 + GFF2992 0.32 +0.2 72,578 - GFF2992 0.33 +0.1 72,578 - GFF2992 0.33 +0.3 72,919 + GFF2992 0.56 -0.3 72,919 + GFF2992 0.56 -0.1 72,920 - GFF2992 0.56 -0.7 72,920 - GFF2992 0.56 +0.0 72,961 + GFF2992 0.59 -0.4 72,961 + GFF2992 0.59 -0.1 72,961 + GFF2992 0.59 +1.5 72,961 + GFF2992 0.59 +0.3 72,961 + GFF2992 0.59 +0.2 72,962 - GFF2992 0.59 -0.4 72,962 - GFF2992 0.59 +0.1 72,962 - GFF2992 0.59 +0.3 72,962 - GFF2992 0.59 +1.8 72,962 - GFF2992 0.59 -1.0 73,183 + GFF2992 0.75 +0.1 73,183 + GFF2992 0.75 -0.5 73,184 - GFF2992 0.75 -0.2 73,262 - GFF2992 0.80 +1.4 73,375 + GFF2992 0.88 +0.7 73,376 - GFF2992 0.88 +1.1 73,376 - GFF2992 0.88 -0.0 73,384 + GFF2992 0.89 -0.6 73,385 - GFF2992 0.89 +1.0 73,443 - -0.3 73,487 - -2.5 73,540 + -0.4 73,541 - -0.1 73,560 + +0.5 73,560 + +0.8 73,561 - +0.2 73,563 + +0.8 73,564 - -0.9 73,564 - +1.2 73,677 + GFF2993 0.24 -0.2 73,678 - GFF2993 0.24 +0.1 73,678 - GFF2993 0.24 -0.5 73,812 + GFF2993 0.52 -0.1 73,812 + GFF2993 0.52 -0.7 73,813 - GFF2993 0.52 +1.6 73,813 - GFF2993 0.52 +0.8 73,813 - GFF2993 0.52 -0.6 73,813 - GFF2993 0.52 +0.1 73,968 + GFF2993 0.84 -1.1 74,163 - -0.3
Or see this region's nucleotide sequence