Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2758 and GFF2759 are separated by 10 nucleotides GFF2759 and GFF2760 overlap by 4 nucleotides GFF2760 and GFF2761 are separated by 45 nucleotides
GFF2758 - Adenylate cyclase (EC 4.6.1.1), at 356,336 to 357,889
GFF2758
GFF2759 - Glutathione S-transferase (EC 2.5.1.18), at 357,900 to 358,517
GFF2759
GFF2760 - Glutathione S-transferase (EC 2.5.1.18), at 358,514 to 359,263
GFF2760
GFF2761 - protein of unknown function DUF1501, at 359,309 to 360,769
GFF2761
Position (kb) 357
358
359 Strain fitness (log2 ratio) -2
-1
0
1 at 356.951 kb on + strand, within GFF2758 at 356.952 kb on - strand, within GFF2758 at 357.615 kb on - strand, within GFF2758 at 357.626 kb on + strand, within GFF2758 at 358.207 kb on + strand, within GFF2759 at 358.208 kb on - strand, within GFF2759 at 358.208 kb on - strand, within GFF2759 at 358.387 kb on + strand, within GFF2759 at 358.507 kb on + strand at 358.507 kb on + strand at 358.507 kb on + strand at 358.507 kb on + strand at 358.507 kb on + strand at 358.507 kb on + strand at 358.507 kb on + strand at 358.507 kb on + strand at 358.508 kb on - strand at 358.508 kb on - strand at 358.774 kb on - strand, within GFF2760 at 358.788 kb on + strand, within GFF2760 at 358.788 kb on + strand, within GFF2760 at 358.788 kb on + strand, within GFF2760 at 358.788 kb on + strand, within GFF2760 at 358.789 kb on - strand, within GFF2760 at 358.789 kb on - strand, within GFF2760 at 358.789 kb on - strand, within GFF2760 at 359.013 kb on + strand, within GFF2760 at 359.013 kb on + strand, within GFF2760 at 359.013 kb on + strand, within GFF2760 at 359.014 kb on - strand, within GFF2760 at 359.014 kb on - strand, within GFF2760 at 359.014 kb on - strand, within GFF2760 at 359.014 kb on - strand, within GFF2760 at 359.106 kb on + strand, within GFF2760 at 359.157 kb on + strand, within GFF2760 at 359.220 kb on + strand at 359.220 kb on + strand at 359.221 kb on - strand at 359.221 kb on - strand at 359.221 kb on - strand at 359.245 kb on + strand at 359.266 kb on + strand at 359.318 kb on - strand at 359.318 kb on - strand at 359.318 kb on - strand at 359.338 kb on - strand at 359.338 kb on - strand at 359.427 kb on + strand at 359.428 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 356,951 + GFF2758 0.40 +1.0 356,952 - GFF2758 0.40 -0.3 357,615 - GFF2758 0.82 -1.9 357,626 + GFF2758 0.83 -0.7 358,207 + GFF2759 0.50 -0.3 358,208 - GFF2759 0.50 -0.5 358,208 - GFF2759 0.50 +0.6 358,387 + GFF2759 0.79 -0.2 358,507 + +0.0 358,507 + -0.6 358,507 + -1.4 358,507 + -0.3 358,507 + +0.6 358,507 + +0.3 358,507 + -0.2 358,507 + -0.3 358,508 - +0.2 358,508 - -1.0 358,774 - GFF2760 0.35 -0.5 358,788 + GFF2760 0.37 -0.2 358,788 + GFF2760 0.37 +0.6 358,788 + GFF2760 0.37 -0.3 358,788 + GFF2760 0.37 +0.0 358,789 - GFF2760 0.37 +0.1 358,789 - GFF2760 0.37 +0.1 358,789 - GFF2760 0.37 +0.7 359,013 + GFF2760 0.67 -0.7 359,013 + GFF2760 0.67 -0.1 359,013 + GFF2760 0.67 -0.4 359,014 - GFF2760 0.67 +0.1 359,014 - GFF2760 0.67 +1.0 359,014 - GFF2760 0.67 +0.4 359,014 - GFF2760 0.67 +1.4 359,106 + GFF2760 0.79 +0.9 359,157 + GFF2760 0.86 -2.1 359,220 + -0.7 359,220 + -0.4 359,221 - +1.6 359,221 - -0.3 359,221 - -0.0 359,245 + -0.7 359,266 + -0.1 359,318 - -0.3 359,318 - -0.1 359,318 - -0.1 359,338 - +1.6 359,338 - +0.2 359,427 + -0.0 359,428 - +0.3
Or see this region's nucleotide sequence