Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2695 and GFF2696 are separated by 24 nucleotides GFF2696 and GFF2697 are separated by 29 nucleotides GFF2697 and GFF2698 overlap by 4 nucleotides GFF2698 and GFF2699 are separated by 6 nucleotides
GFF2695 - ATP-dependent helicase DinG/Rad3, at 284,602 to 286,935
GFF2695
GFF2696 - putative exported protein, at 286,960 to 287,430
GFF2696
GFF2697 - Cardiolipin synthetase (EC 2.7.8.-), at 287,460 to 288,983
GFF2697
GFF2698 - response regulator, at 288,980 to 289,369
GFF2698
GFF2699 - sensor histidine kinase, at 289,376 to 291,004
GFF2699
Position (kb) 287
288
289 Strain fitness (log2 ratio) -1
0
1 at 286.832 kb on - strand at 286.859 kb on - strand at 287.082 kb on - strand, within GFF2696 at 287.727 kb on + strand, within GFF2697 at 287.728 kb on - strand, within GFF2697 at 287.730 kb on + strand, within GFF2697 at 287.730 kb on + strand, within GFF2697 at 287.730 kb on + strand, within GFF2697 at 287.730 kb on + strand, within GFF2697 at 287.730 kb on + strand, within GFF2697 at 287.730 kb on + strand, within GFF2697 at 287.731 kb on - strand, within GFF2697 at 287.731 kb on - strand, within GFF2697 at 287.731 kb on - strand, within GFF2697 at 287.731 kb on - strand, within GFF2697 at 287.731 kb on - strand, within GFF2697 at 287.931 kb on + strand, within GFF2697 at 288.077 kb on - strand, within GFF2697 at 288.077 kb on - strand, within GFF2697 at 288.077 kb on - strand, within GFF2697 at 288.077 kb on - strand, within GFF2697 at 288.126 kb on + strand, within GFF2697 at 288.432 kb on + strand, within GFF2697 at 288.433 kb on - strand, within GFF2697 at 288.982 kb on - strand at 289.038 kb on + strand, within GFF2698 at 289.038 kb on + strand, within GFF2698 at 289.038 kb on + strand, within GFF2698 at 289.038 kb on + strand, within GFF2698 at 289.038 kb on + strand, within GFF2698 at 289.314 kb on + strand, within GFF2698 at 289.315 kb on - strand, within GFF2698 at 289.315 kb on - strand, within GFF2698 at 289.315 kb on - strand, within GFF2698 at 289.315 kb on - strand, within GFF2698 at 289.618 kb on + strand, within GFF2699 at 289.619 kb on - strand, within GFF2699 at 289.619 kb on - strand, within GFF2699 at 289.854 kb on + strand, within GFF2699 at 289.855 kb on - strand, within GFF2699
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 286,832 - +0.6 286,859 - -0.1 287,082 - GFF2696 0.26 +0.0 287,727 + GFF2697 0.18 +0.3 287,728 - GFF2697 0.18 -0.9 287,730 + GFF2697 0.18 -1.1 287,730 + GFF2697 0.18 -0.6 287,730 + GFF2697 0.18 +0.4 287,730 + GFF2697 0.18 +0.9 287,730 + GFF2697 0.18 +0.7 287,730 + GFF2697 0.18 +0.4 287,731 - GFF2697 0.18 +0.0 287,731 - GFF2697 0.18 +0.9 287,731 - GFF2697 0.18 +0.0 287,731 - GFF2697 0.18 +1.1 287,731 - GFF2697 0.18 +0.1 287,931 + GFF2697 0.31 +0.1 288,077 - GFF2697 0.40 -0.1 288,077 - GFF2697 0.40 +0.0 288,077 - GFF2697 0.40 +0.4 288,077 - GFF2697 0.40 +0.2 288,126 + GFF2697 0.44 -0.4 288,432 + GFF2697 0.64 -1.5 288,433 - GFF2697 0.64 +0.1 288,982 - +0.4 289,038 + GFF2698 0.15 -0.2 289,038 + GFF2698 0.15 +0.5 289,038 + GFF2698 0.15 -0.7 289,038 + GFF2698 0.15 +0.1 289,038 + GFF2698 0.15 +0.5 289,314 + GFF2698 0.86 -0.1 289,315 - GFF2698 0.86 -0.0 289,315 - GFF2698 0.86 -0.8 289,315 - GFF2698 0.86 +0.9 289,315 - GFF2698 0.86 +0.4 289,618 + GFF2699 0.15 +0.0 289,619 - GFF2699 0.15 +0.1 289,619 - GFF2699 0.15 -0.4 289,854 + GFF2699 0.29 +1.3 289,855 - GFF2699 0.29 +0.6
Or see this region's nucleotide sequence