Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF267 and GFF268 are separated by 12 nucleotides GFF268 and GFF269 are separated by 4 nucleotides GFF269 and GFF270 are separated by 17 nucleotides
GFF267 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 280,940 to 282,187
GFF267
GFF268 - Transcriptional regulator, LysR family, at 282,200 to 282,715
GFF268
GFF269 - putative exported protein, at 282,720 to 283,061
GFF269
GFF270 - Transcriptional regulator, LysR family, at 283,079 to 284,062
GFF270
Position (kb) 282
283 Strain fitness (log2 ratio) -2
-1
0
1 at 281.216 kb on + strand, within GFF267 at 281.216 kb on + strand, within GFF267 at 281.216 kb on + strand, within GFF267 at 281.216 kb on + strand, within GFF267 at 281.217 kb on - strand, within GFF267 at 281.217 kb on - strand, within GFF267 at 281.217 kb on - strand, within GFF267 at 281.217 kb on - strand, within GFF267 at 281.219 kb on + strand, within GFF267 at 281.219 kb on + strand, within GFF267 at 281.220 kb on - strand, within GFF267 at 281.264 kb on + strand, within GFF267 at 281.264 kb on + strand, within GFF267 at 281.351 kb on + strand, within GFF267 at 281.351 kb on + strand, within GFF267 at 281.352 kb on - strand, within GFF267 at 281.352 kb on - strand, within GFF267 at 281.364 kb on - strand, within GFF267 at 281.555 kb on + strand, within GFF267 at 281.555 kb on + strand, within GFF267 at 281.733 kb on - strand, within GFF267 at 281.763 kb on - strand, within GFF267 at 281.774 kb on + strand, within GFF267 at 281.774 kb on + strand, within GFF267 at 281.774 kb on + strand, within GFF267 at 281.775 kb on - strand, within GFF267 at 281.825 kb on + strand, within GFF267 at 281.832 kb on - strand, within GFF267 at 281.832 kb on - strand, within GFF267 at 281.832 kb on - strand, within GFF267 at 281.832 kb on - strand, within GFF267 at 282.309 kb on - strand, within GFF268 at 282.498 kb on + strand, within GFF268 at 282.499 kb on - strand, within GFF268 at 282.499 kb on - strand, within GFF268 at 282.499 kb on - strand, within GFF268 at 282.636 kb on + strand, within GFF268 at 282.637 kb on - strand, within GFF268 at 282.852 kb on + strand, within GFF269 at 282.852 kb on + strand, within GFF269 at 282.852 kb on + strand, within GFF269 at 282.852 kb on + strand, within GFF269 at 282.853 kb on - strand, within GFF269 at 282.853 kb on - strand, within GFF269 at 282.853 kb on - strand, within GFF269 at 282.853 kb on - strand, within GFF269 at 283.012 kb on - strand, within GFF269 at 283.275 kb on + strand, within GFF270 at 283.275 kb on + strand, within GFF270 at 283.276 kb on - strand, within GFF270 at 283.276 kb on - strand, within GFF270 at 283.276 kb on - strand, within GFF270 at 283.276 kb on - strand, within GFF270
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 281,216 + GFF267 0.22 +0.2 281,216 + GFF267 0.22 +0.2 281,216 + GFF267 0.22 -0.1 281,216 + GFF267 0.22 +0.2 281,217 - GFF267 0.22 +0.1 281,217 - GFF267 0.22 +0.0 281,217 - GFF267 0.22 -2.1 281,217 - GFF267 0.22 -0.1 281,219 + GFF267 0.22 -0.7 281,219 + GFF267 0.22 +0.3 281,220 - GFF267 0.22 +0.3 281,264 + GFF267 0.26 +0.1 281,264 + GFF267 0.26 +1.2 281,351 + GFF267 0.33 -0.2 281,351 + GFF267 0.33 -0.8 281,352 - GFF267 0.33 +0.7 281,352 - GFF267 0.33 +0.2 281,364 - GFF267 0.34 +0.3 281,555 + GFF267 0.49 +0.2 281,555 + GFF267 0.49 -1.2 281,733 - GFF267 0.64 -0.8 281,763 - GFF267 0.66 +0.8 281,774 + GFF267 0.67 +1.0 281,774 + GFF267 0.67 +0.4 281,774 + GFF267 0.67 +0.7 281,775 - GFF267 0.67 +0.3 281,825 + GFF267 0.71 -0.3 281,832 - GFF267 0.71 +1.5 281,832 - GFF267 0.71 +0.3 281,832 - GFF267 0.71 -1.2 281,832 - GFF267 0.71 -0.3 282,309 - GFF268 0.21 -1.1 282,498 + GFF268 0.58 -0.1 282,499 - GFF268 0.58 -1.2 282,499 - GFF268 0.58 -0.6 282,499 - GFF268 0.58 +0.5 282,636 + GFF268 0.84 -0.5 282,637 - GFF268 0.85 -0.7 282,852 + GFF269 0.39 +0.2 282,852 + GFF269 0.39 -0.3 282,852 + GFF269 0.39 +1.0 282,852 + GFF269 0.39 -0.0 282,853 - GFF269 0.39 -0.5 282,853 - GFF269 0.39 +0.1 282,853 - GFF269 0.39 +0.1 282,853 - GFF269 0.39 -0.1 283,012 - GFF269 0.85 -1.8 283,275 + GFF270 0.20 +0.2 283,275 + GFF270 0.20 +0.4 283,276 - GFF270 0.20 +0.2 283,276 - GFF270 0.20 +0.0 283,276 - GFF270 0.20 +0.4 283,276 - GFF270 0.20 -0.5
Or see this region's nucleotide sequence