Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2394

Experiment: Ying_Nucleobase14 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2394 and GFF2395 are separated by 324 nucleotidesGFF2395 and GFF2396 overlap by 4 nucleotides GFF2394 - Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3), at 37,791 to 39,617 GFF2394 GFF2395 - FOG: GGDEF domain, at 39,942 to 40,445 GFF2395 GFF2396 - hypothetical protein, at 40,442 to 40,852 GFF2396 Position (kb) 37 38 39 40Strain fitness (log2 ratio) -2 -1 0 1at 36.946 kb on - strandat 36.962 kb on - strandat 37.004 kb on + strandat 37.004 kb on + strandat 37.004 kb on + strandat 37.004 kb on + strandat 37.004 kb on + strandat 37.004 kb on + strandat 37.004 kb on + strandat 37.005 kb on - strandat 37.005 kb on - strandat 37.005 kb on - strandat 37.139 kb on + strandat 37.139 kb on + strandat 37.140 kb on - strandat 37.226 kb on + strandat 37.385 kb on + strandat 37.385 kb on + strandat 37.386 kb on - strandat 37.421 kb on + strandat 37.421 kb on + strandat 37.421 kb on + strandat 37.421 kb on + strandat 37.422 kb on - strandat 37.422 kb on - strandat 37.422 kb on - strandat 37.422 kb on - strandat 37.422 kb on - strandat 37.422 kb on - strandat 37.422 kb on - strandat 37.492 kb on - strandat 37.492 kb on - strandat 37.492 kb on - strandat 37.540 kb on - strandat 37.646 kb on - strandat 37.669 kb on - strandat 37.669 kb on - strandat 37.669 kb on - strandat 37.693 kb on + strandat 37.693 kb on + strandat 37.693 kb on + strandat 37.693 kb on + strandat 37.694 kb on - strandat 37.694 kb on - strandat 37.694 kb on - strandat 37.753 kb on - strandat 37.850 kb on - strandat 37.850 kb on - strandat 37.850 kb on - strandat 37.973 kb on + strandat 37.973 kb on + strandat 37.974 kb on - strand, within GFF2394at 38.052 kb on - strand, within GFF2394at 38.105 kb on + strand, within GFF2394at 38.105 kb on + strand, within GFF2394at 38.105 kb on + strand, within GFF2394at 38.105 kb on + strand, within GFF2394at 38.105 kb on + strand, within GFF2394at 38.106 kb on - strand, within GFF2394at 38.106 kb on - strand, within GFF2394at 38.106 kb on - strand, within GFF2394at 38.271 kb on + strand, within GFF2394at 38.271 kb on + strand, within GFF2394at 38.271 kb on + strand, within GFF2394at 38.271 kb on + strand, within GFF2394at 38.271 kb on + strand, within GFF2394at 38.272 kb on - strand, within GFF2394at 38.272 kb on - strand, within GFF2394at 38.272 kb on - strand, within GFF2394at 38.310 kb on + strand, within GFF2394at 38.310 kb on + strand, within GFF2394at 38.310 kb on + strand, within GFF2394at 38.310 kb on + strand, within GFF2394at 38.310 kb on + strand, within GFF2394at 38.310 kb on + strand, within GFF2394at 38.311 kb on - strand, within GFF2394at 38.311 kb on - strand, within GFF2394at 38.322 kb on + strand, within GFF2394at 38.322 kb on + strand, within GFF2394at 38.323 kb on - strand, within GFF2394at 38.388 kb on + strand, within GFF2394at 38.389 kb on - strand, within GFF2394at 38.389 kb on - strand, within GFF2394at 38.389 kb on - strand, within GFF2394at 38.439 kb on + strand, within GFF2394at 38.644 kb on - strand, within GFF2394at 38.672 kb on - strand, within GFF2394at 38.672 kb on - strand, within GFF2394at 38.752 kb on - strand, within GFF2394at 38.796 kb on + strand, within GFF2394at 38.796 kb on + strand, within GFF2394at 38.841 kb on + strand, within GFF2394at 38.842 kb on - strand, within GFF2394at 38.842 kb on - strand, within GFF2394at 38.904 kb on + strand, within GFF2394at 38.905 kb on - strand, within GFF2394at 38.920 kb on + strand, within GFF2394at 38.921 kb on - strand, within GFF2394at 39.126 kb on + strand, within GFF2394at 39.126 kb on + strand, within GFF2394at 39.126 kb on + strand, within GFF2394at 39.126 kb on + strand, within GFF2394at 39.127 kb on - strand, within GFF2394at 39.127 kb on - strand, within GFF2394at 39.127 kb on - strand, within GFF2394at 39.127 kb on - strand, within GFF2394at 39.166 kb on + strand, within GFF2394at 39.166 kb on + strand, within GFF2394at 39.166 kb on + strand, within GFF2394at 39.166 kb on + strand, within GFF2394at 39.167 kb on - strand, within GFF2394at 39.170 kb on + strand, within GFF2394at 39.171 kb on - strand, within GFF2394at 39.236 kb on + strand, within GFF2394at 39.236 kb on + strand, within GFF2394at 39.237 kb on - strand, within GFF2394at 39.267 kb on + strand, within GFF2394at 39.267 kb on + strand, within GFF2394at 39.268 kb on - strand, within GFF2394at 39.284 kb on + strand, within GFF2394at 39.284 kb on + strand, within GFF2394at 39.284 kb on + strand, within GFF2394at 39.284 kb on + strand, within GFF2394at 39.284 kb on + strand, within GFF2394at 39.285 kb on - strand, within GFF2394at 39.285 kb on - strand, within GFF2394at 39.285 kb on - strand, within GFF2394at 39.311 kb on - strand, within GFF2394at 39.389 kb on + strand, within GFF2394at 39.390 kb on - strand, within GFF2394at 39.390 kb on - strand, within GFF2394at 39.390 kb on - strand, within GFF2394at 39.459 kb on + strandat 39.621 kb on + strandat 39.621 kb on + strandat 39.622 kb on - strandat 39.635 kb on - strandat 39.720 kb on + strandat 39.721 kb on - strandat 39.822 kb on + strandat 39.864 kb on + strandat 39.915 kb on - strandat 40.270 kb on - strand, within GFF2395at 40.270 kb on - strand, within GFF2395at 40.270 kb on - strand, within GFF2395at 40.530 kb on + strand, within GFF2396at 40.530 kb on + strand, within GFF2396at 40.530 kb on + strand, within GFF2396at 40.530 kb on + strand, within GFF2396at 40.531 kb on - strand, within GFF2396at 40.531 kb on - strand, within GFF2396

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1
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36,946 - -0.5
36,962 - -0.3
37,004 + -0.1
37,004 + +0.3
37,004 + +0.2
37,004 + -0.6
37,004 + -1.2
37,004 + +0.1
37,004 + -0.1
37,005 - -0.2
37,005 - +0.8
37,005 - -0.4
37,139 + -0.4
37,139 + -1.4
37,140 - -0.7
37,226 + +0.3
37,385 + -1.9
37,385 + -0.1
37,386 - -1.2
37,421 + -0.8
37,421 + +0.2
37,421 + +0.3
37,421 + +0.7
37,422 - -0.1
37,422 - -0.5
37,422 - -0.6
37,422 - +0.4
37,422 - -0.3
37,422 - +0.1
37,422 - -0.1
37,492 - -0.0
37,492 - -0.8
37,492 - -0.5
37,540 - -0.0
37,646 - -0.2
37,669 - +0.1
37,669 - -1.8
37,669 - -0.7
37,693 + -1.6
37,693 + -0.6
37,693 + -2.4
37,693 + -0.0
37,694 - +0.1
37,694 - -0.0
37,694 - -0.4
37,753 - +0.1
37,850 - +1.0
37,850 - +0.8
37,850 - +0.5
37,973 + +0.3
37,973 + -1.2
37,974 - GFF2394 0.10 -0.5
38,052 - GFF2394 0.14 +1.2
38,105 + GFF2394 0.17 -2.6
38,105 + GFF2394 0.17 -0.4
38,105 + GFF2394 0.17 -0.2
38,105 + GFF2394 0.17 -0.1
38,105 + GFF2394 0.17 +0.1
38,106 - GFF2394 0.17 +0.2
38,106 - GFF2394 0.17 +0.0
38,106 - GFF2394 0.17 -0.2
38,271 + GFF2394 0.26 -0.4
38,271 + GFF2394 0.26 -0.8
38,271 + GFF2394 0.26 +0.0
38,271 + GFF2394 0.26 -0.1
38,271 + GFF2394 0.26 -0.2
38,272 - GFF2394 0.26 -0.5
38,272 - GFF2394 0.26 -0.1
38,272 - GFF2394 0.26 +0.5
38,310 + GFF2394 0.28 +0.2
38,310 + GFF2394 0.28 -0.0
38,310 + GFF2394 0.28 +0.4
38,310 + GFF2394 0.28 -0.4
38,310 + GFF2394 0.28 +1.4
38,310 + GFF2394 0.28 +1.2
38,311 - GFF2394 0.28 -1.4
38,311 - GFF2394 0.28 +0.1
38,322 + GFF2394 0.29 +0.4
38,322 + GFF2394 0.29 -0.1
38,323 - GFF2394 0.29 -0.6
38,388 + GFF2394 0.33 +0.3
38,389 - GFF2394 0.33 -0.5
38,389 - GFF2394 0.33 +0.1
38,389 - GFF2394 0.33 +0.2
38,439 + GFF2394 0.35 -0.5
38,644 - GFF2394 0.47 +0.5
38,672 - GFF2394 0.48 +1.1
38,672 - GFF2394 0.48 -0.0
38,752 - GFF2394 0.53 +0.1
38,796 + GFF2394 0.55 +0.5
38,796 + GFF2394 0.55 +1.0
38,841 + GFF2394 0.57 +0.3
38,842 - GFF2394 0.58 -0.2
38,842 - GFF2394 0.58 -0.2
38,904 + GFF2394 0.61 -0.7
38,905 - GFF2394 0.61 +0.4
38,920 + GFF2394 0.62 +0.6
38,921 - GFF2394 0.62 +1.0
39,126 + GFF2394 0.73 -0.9
39,126 + GFF2394 0.73 -0.8
39,126 + GFF2394 0.73 -0.0
39,126 + GFF2394 0.73 +0.5
39,127 - GFF2394 0.73 -1.0
39,127 - GFF2394 0.73 +0.3
39,127 - GFF2394 0.73 -0.0
39,127 - GFF2394 0.73 -0.0
39,166 + GFF2394 0.75 +0.5
39,166 + GFF2394 0.75 +0.6
39,166 + GFF2394 0.75 -0.0
39,166 + GFF2394 0.75 +0.1
39,167 - GFF2394 0.75 +0.5
39,170 + GFF2394 0.75 +0.1
39,171 - GFF2394 0.76 +0.8
39,236 + GFF2394 0.79 +1.3
39,236 + GFF2394 0.79 -0.6
39,237 - GFF2394 0.79 -0.5
39,267 + GFF2394 0.81 -0.0
39,267 + GFF2394 0.81 +0.1
39,268 - GFF2394 0.81 -0.1
39,284 + GFF2394 0.82 +0.3
39,284 + GFF2394 0.82 +0.1
39,284 + GFF2394 0.82 +0.5
39,284 + GFF2394 0.82 +0.6
39,284 + GFF2394 0.82 +0.2
39,285 - GFF2394 0.82 -0.0
39,285 - GFF2394 0.82 +0.1
39,285 - GFF2394 0.82 +0.2
39,311 - GFF2394 0.83 +0.2
39,389 + GFF2394 0.87 +1.2
39,390 - GFF2394 0.88 +0.5
39,390 - GFF2394 0.88 +0.2
39,390 - GFF2394 0.88 +0.2
39,459 + +0.1
39,621 + -0.3
39,621 + +0.1
39,622 - -0.1
39,635 - -1.2
39,720 + -0.3
39,721 - +1.1
39,822 + -0.3
39,864 + +0.3
39,915 - +0.2
40,270 - GFF2395 0.65 +0.0
40,270 - GFF2395 0.65 +0.2
40,270 - GFF2395 0.65 -1.1
40,530 + GFF2396 0.21 -0.8
40,530 + GFF2396 0.21 -0.4
40,530 + GFF2396 0.21 +0.3
40,530 + GFF2396 0.21 +1.3
40,531 - GFF2396 0.22 -0.2
40,531 - GFF2396 0.22 -1.4

Or see this region's nucleotide sequence