Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2279

Experiment: Ying_Nucleobase14 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 1
1,164,118	+		GFF2278	0.63	+0.3
1,164,118	+		GFF2278	0.63	-0.3
1,164,119	-		GFF2278	0.63	-1.0
1,164,119	-		GFF2278	0.63	+0.2
1,164,119	-		GFF2278	0.63	+0.2
1,164,119	-		GFF2278	0.63	-0.4
1,164,194	-		GFF2278	0.66	-0.3
1,164,194	-		GFF2278	0.66	+0.3
1,164,226	+		GFF2278	0.67	+0.9
1,164,227	-		GFF2278	0.67	+0.5
1,164,257	-		GFF2278	0.69	+0.3
1,164,334	+		GFF2278	0.71	+0.1
1,164,335	-		GFF2278	0.71	-0.1
1,164,335	-		GFF2278	0.71	+0.7
1,164,442	+		GFF2278	0.75	+0.1
1,164,442	+		GFF2278	0.75	+0.3
1,164,442	+		GFF2278	0.75	+0.4
1,164,442	+		GFF2278	0.75	+0.2
1,164,442	+		GFF2278	0.75	-1.2
1,164,442	+		GFF2278	0.75	+0.6
1,164,442	+		GFF2278	0.75	+0.3
1,164,442	+		GFF2278	0.75	-0.7
1,164,442	+		GFF2278	0.75	+0.3
1,164,442	+		GFF2278	0.75	+2.2
1,164,442	+		GFF2278	0.75	+0.6
1,164,442	+		GFF2278	0.75	+0.1
1,164,443	-		GFF2278	0.75	-0.3
1,164,443	-		GFF2278	0.75	-0.8
1,164,443	-		GFF2278	0.75	+1.1
1,164,443	-		GFF2278	0.75	-0.2
1,164,443	-		GFF2278	0.75	+0.4
1,164,544	+		GFF2278	0.79	+0.2
1,164,544	+		GFF2278	0.79	-0.2
1,164,544	+		GFF2278	0.79	+0.5
1,164,545	-		GFF2278	0.79	-1.2
1,164,545	-		GFF2278	0.79	-0.1
1,164,545	-		GFF2278	0.79	+0.1
1,164,545	-		GFF2278	0.79	+0.7
1,164,653	-		GFF2278	0.83	+0.1
1,164,733	+		GFF2278	0.86	-1.7
1,164,733	+		GFF2278	0.86	+1.5
1,164,734	-		GFF2278	0.86	+0.7
1,164,772	+		GFF2278	0.88	-0.8
1,164,773	-		GFF2278	0.88	+0.4
1,164,980	-				+0.7
1,164,980	-				-0.3
1,165,075	+				-1.6
1,165,076	-				+0.1
1,165,305	+		GFF2279	0.24	+0.4
1,165,323	+		GFF2279	0.27	-0.1
1,165,323	+		GFF2279	0.27	-0.7
1,165,323	+		GFF2279	0.27	-0.8
1,165,324	-		GFF2279	0.27	-0.1
1,165,405	-		GFF2279	0.36	+0.3
1,165,444	-		GFF2279	0.40	-0.1
1,165,444	-		GFF2279	0.40	-0.0
1,165,449	+		GFF2279	0.41	+0.2
1,165,449	+		GFF2279	0.41	+0.3
1,165,449	+		GFF2279	0.41	-1.7
1,165,450	-		GFF2279	0.41	+0.5
1,165,450	-		GFF2279	0.41	-0.3
1,165,450	-		GFF2279	0.41	+0.4
1,165,450	-		GFF2279	0.41	-0.2
1,165,450	-		GFF2279	0.41	-0.5
1,165,450	-		GFF2279	0.41	-0.6
1,165,450	-		GFF2279	0.41	-0.2
1,165,450	-		GFF2279	0.41	-0.7
1,165,578	+		GFF2279	0.56	+0.1
1,165,578	+		GFF2279	0.56	+0.1
1,165,578	+		GFF2279	0.56	-0.1
1,165,596	+		GFF2279	0.58	-0.2
1,165,596	+		GFF2279	0.58	+0.6
1,165,597	-		GFF2279	0.58	+0.1
1,165,597	-		GFF2279	0.58	+0.3
1,165,597	-		GFF2279	0.58	-1.7
1,165,752	+		GFF2279	0.76	+0.2
1,165,753	-		GFF2279	0.76	-1.2
1,165,842	+		GFF2279	0.86	-2.3
1,165,950	+				-0.6
1,165,951	-				-0.3
1,166,039	+				+2.7
1,166,039	+				-0.1
1,166,039	+				-0.9
1,166,039	+				-2.2
1,166,039	+				-1.2
1,166,039	+				+0.2
1,166,040	-				-0.3
1,166,040	-				-0.7
1,166,040	-				+0.7
1,166,040	-				+0.3
1,166,040	-				+0.3
1,166,040	-				+0.4
1,166,040	-				+0.6
1,166,129	+		GFF2280	0.23	+0.3
1,166,130	-		GFF2280	0.23	-0.4
1,166,130	-		GFF2280	0.23	+0.7
1,166,162	+		GFF2280	0.31	+0.1
1,166,162	+		GFF2280	0.31	-1.3
1,166,162	+		GFF2280	0.31	-0.5
1,166,163	-		GFF2280	0.31	-0.2
1,166,163	-		GFF2280	0.31	-0.7
1,166,163	-		GFF2280	0.31	-1.9
1,166,273	+		GFF2280	0.58	+0.1
1,166,273	+		GFF2280	0.58	-0.7
1,166,273	+		GFF2280	0.58	-0.0
1,166,273	+		GFF2280	0.58	+0.2
1,166,274	-		GFF2280	0.58	-0.1
1,166,274	-		GFF2280	0.58	+0.5
1,166,274	-		GFF2280	0.58	-0.1
1,166,331	-		GFF2280	0.72	-0.2
1,166,331	-		GFF2280	0.72	+0.1
1,166,331	-		GFF2280	0.72	-1.2
1,166,789	-		GFF2281	0.22	+0.3
1,166,789	-		GFF2281	0.22	-1.0
1,166,920	+		GFF2281	0.33	+0.9