Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2212

Experiment: Ying_Nucleobase14 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2211 and GFF2212 overlap by 4 nucleotidesGFF2212 and GFF2213 are separated by 7 nucleotides GFF2211 - Methionyl-tRNA formyltransferase (EC 2.1.2.9), at 1,100,686 to 1,102,422 GFF2211 GFF2212 - hypothetical protein, at 1,102,419 to 1,102,877 GFF2212 GFF2213 - [NiFe] hydrogenase metallocenter assembly protein HypE, at 1,102,885 to 1,103,997 GFF2213 Position (kb) 1102 1103Strain fitness (log2 ratio) -2 -1 0 1at 1101.513 kb on - strand, within GFF2211at 1102.474 kb on + strand, within GFF2212at 1102.474 kb on + strand, within GFF2212at 1102.475 kb on - strand, within GFF2212at 1102.516 kb on + strand, within GFF2212at 1102.517 kb on - strand, within GFF2212at 1103.099 kb on + strand, within GFF2213

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1
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1,101,513 - GFF2211 0.48 +0.1
1,102,474 + GFF2212 0.12 -0.1
1,102,474 + GFF2212 0.12 -0.2
1,102,475 - GFF2212 0.12 -1.9
1,102,516 + GFF2212 0.21 -0.0
1,102,517 - GFF2212 0.21 -0.6
1,103,099 + GFF2213 0.19 -0.9

Or see this region's nucleotide sequence