Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF212 and GFF213 are separated by 74 nucleotides GFF213 and GFF214 are separated by 550 nucleotides
GFF212 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 230,087 to 231,181
GFF212
GFF213 - Guanine deaminase (EC 3.5.4.3), at 231,256 to 232,536
GFF213
GFF214 - sensory box histidine kinase/response regulator, at 233,087 to 235,279
GFF214
Position (kb) 231
232
233 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 230.297 kb on + strand, within GFF212 at 230.298 kb on - strand, within GFF212 at 230.298 kb on - strand, within GFF212 at 230.393 kb on + strand, within GFF212 at 230.393 kb on + strand, within GFF212 at 230.393 kb on + strand, within GFF212 at 230.394 kb on - strand, within GFF212 at 230.394 kb on - strand, within GFF212 at 230.394 kb on - strand, within GFF212 at 230.459 kb on + strand, within GFF212 at 230.459 kb on + strand, within GFF212 at 230.460 kb on - strand, within GFF212 at 230.498 kb on + strand, within GFF212 at 230.499 kb on - strand, within GFF212 at 230.501 kb on + strand, within GFF212 at 230.502 kb on - strand, within GFF212 at 230.502 kb on - strand, within GFF212 at 230.502 kb on - strand, within GFF212 at 230.502 kb on - strand, within GFF212 at 230.513 kb on + strand, within GFF212 at 230.558 kb on + strand, within GFF212 at 230.558 kb on + strand, within GFF212 at 230.558 kb on + strand, within GFF212 at 230.558 kb on + strand, within GFF212 at 230.559 kb on - strand, within GFF212 at 230.559 kb on - strand, within GFF212 at 230.801 kb on + strand, within GFF212 at 230.802 kb on + strand, within GFF212 at 230.802 kb on - strand, within GFF212 at 230.802 kb on - strand, within GFF212 at 230.802 kb on - strand, within GFF212 at 230.870 kb on + strand, within GFF212 at 230.870 kb on + strand, within GFF212 at 230.870 kb on + strand, within GFF212 at 230.870 kb on + strand, within GFF212 at 230.870 kb on + strand, within GFF212 at 230.870 kb on + strand, within GFF212 at 230.871 kb on - strand, within GFF212 at 230.873 kb on + strand, within GFF212 at 230.873 kb on + strand, within GFF212 at 230.873 kb on + strand, within GFF212 at 230.874 kb on - strand, within GFF212 at 230.874 kb on - strand, within GFF212 at 230.874 kb on - strand, within GFF212 at 230.874 kb on - strand, within GFF212 at 231.196 kb on + strand at 231.219 kb on + strand at 231.219 kb on + strand at 231.219 kb on + strand at 231.266 kb on - strand at 231.311 kb on - strand at 231.311 kb on - strand at 231.311 kb on - strand at 231.403 kb on + strand, within GFF213 at 231.403 kb on + strand, within GFF213 at 231.403 kb on + strand, within GFF213 at 231.404 kb on - strand, within GFF213 at 231.404 kb on - strand, within GFF213 at 231.404 kb on - strand, within GFF213 at 231.404 kb on - strand, within GFF213 at 231.404 kb on - strand, within GFF213 at 231.535 kb on + strand, within GFF213 at 231.535 kb on + strand, within GFF213 at 231.535 kb on + strand, within GFF213 at 231.535 kb on + strand, within GFF213 at 231.535 kb on + strand, within GFF213 at 231.536 kb on - strand, within GFF213 at 231.536 kb on - strand, within GFF213 at 231.536 kb on - strand, within GFF213 at 231.832 kb on + strand, within GFF213 at 231.833 kb on - strand, within GFF213 at 231.908 kb on - strand, within GFF213 at 231.994 kb on + strand, within GFF213 at 231.995 kb on - strand, within GFF213 at 232.006 kb on + strand, within GFF213 at 232.007 kb on - strand, within GFF213 at 232.007 kb on - strand, within GFF213 at 232.042 kb on + strand, within GFF213 at 232.042 kb on + strand, within GFF213 at 232.042 kb on + strand, within GFF213 at 232.042 kb on + strand, within GFF213 at 232.043 kb on - strand, within GFF213 at 232.156 kb on + strand, within GFF213 at 232.187 kb on - strand, within GFF213 at 232.252 kb on + strand, within GFF213 at 232.253 kb on - strand, within GFF213 at 232.582 kb on - strand at 232.588 kb on + strand at 232.611 kb on + strand at 232.611 kb on + strand at 232.611 kb on + strand at 232.722 kb on + strand at 232.723 kb on - strand at 232.723 kb on - strand at 232.723 kb on - strand at 232.781 kb on + strand at 232.781 kb on + strand at 232.781 kb on + strand at 232.781 kb on + strand at 232.782 kb on - strand at 232.782 kb on - strand at 232.790 kb on + strand at 232.790 kb on + strand at 232.791 kb on - strand at 232.791 kb on - strand at 232.791 kb on - strand at 232.868 kb on + strand at 232.868 kb on + strand at 232.868 kb on + strand at 232.868 kb on + strand at 232.868 kb on + strand at 232.869 kb on - strand at 232.904 kb on + strand at 232.905 kb on - strand at 232.994 kb on + strand at 232.994 kb on + strand at 233.004 kb on - strand at 233.009 kb on + strand at 233.009 kb on + strand at 233.009 kb on + strand at 233.010 kb on - strand at 233.024 kb on + strand at 233.024 kb on + strand at 233.024 kb on + strand at 233.024 kb on + strand at 233.024 kb on + strand at 233.024 kb on + strand at 233.024 kb on + strand at 233.024 kb on + strand at 233.024 kb on + strand at 233.024 kb on + strand at 233.024 kb on + strand at 233.025 kb on - strand at 233.025 kb on - strand at 233.025 kb on - strand at 233.025 kb on - strand at 233.025 kb on - strand at 233.025 kb on - strand at 233.025 kb on - strand at 233.025 kb on - strand at 233.025 kb on - strand at 233.058 kb on + strand at 233.058 kb on + strand at 233.058 kb on + strand at 233.084 kb on - strand at 233.166 kb on - strand at 233.321 kb on + strand, within GFF214 at 233.321 kb on + strand, within GFF214 at 233.321 kb on + strand, within GFF214 at 233.321 kb on + strand, within GFF214 at 233.321 kb on + strand, within GFF214 at 233.322 kb on - strand, within GFF214 at 233.322 kb on - strand, within GFF214 at 233.322 kb on - strand, within GFF214 at 233.322 kb on - strand, within GFF214
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 230,297 + GFF212 0.19 -0.5 230,298 - GFF212 0.19 -0.2 230,298 - GFF212 0.19 +0.1 230,393 + GFF212 0.28 -0.0 230,393 + GFF212 0.28 +0.1 230,393 + GFF212 0.28 +0.5 230,394 - GFF212 0.28 +0.5 230,394 - GFF212 0.28 -0.2 230,394 - GFF212 0.28 +0.5 230,459 + GFF212 0.34 -0.3 230,459 + GFF212 0.34 +0.6 230,460 - GFF212 0.34 +0.3 230,498 + GFF212 0.38 -0.3 230,499 - GFF212 0.38 -0.9 230,501 + GFF212 0.38 -0.1 230,502 - GFF212 0.38 -2.1 230,502 - GFF212 0.38 -0.6 230,502 - GFF212 0.38 +1.4 230,502 - GFF212 0.38 +0.8 230,513 + GFF212 0.39 +0.3 230,558 + GFF212 0.43 -1.0 230,558 + GFF212 0.43 +1.9 230,558 + GFF212 0.43 +0.3 230,558 + GFF212 0.43 +0.1 230,559 - GFF212 0.43 +0.3 230,559 - GFF212 0.43 -0.1 230,801 + GFF212 0.65 -0.7 230,802 + GFF212 0.65 +1.2 230,802 - GFF212 0.65 -0.2 230,802 - GFF212 0.65 +0.5 230,802 - GFF212 0.65 -2.8 230,870 + GFF212 0.72 +0.3 230,870 + GFF212 0.72 -0.3 230,870 + GFF212 0.72 +0.1 230,870 + GFF212 0.72 +0.2 230,870 + GFF212 0.72 +0.9 230,870 + GFF212 0.72 +0.2 230,871 - GFF212 0.72 -1.0 230,873 + GFF212 0.72 +2.9 230,873 + GFF212 0.72 +1.1 230,873 + GFF212 0.72 +0.1 230,874 - GFF212 0.72 +1.4 230,874 - GFF212 0.72 +0.1 230,874 - GFF212 0.72 -0.5 230,874 - GFF212 0.72 +0.3 231,196 + -0.2 231,219 + -0.4 231,219 + -0.7 231,219 + -0.0 231,266 - +2.5 231,311 - +1.1 231,311 - -0.7 231,311 - -0.7 231,403 + GFF213 0.11 -1.5 231,403 + GFF213 0.11 -0.8 231,403 + GFF213 0.11 +0.2 231,404 - GFF213 0.12 -1.1 231,404 - GFF213 0.12 +0.0 231,404 - GFF213 0.12 +0.5 231,404 - GFF213 0.12 -0.9 231,404 - GFF213 0.12 -0.7 231,535 + GFF213 0.22 -0.6 231,535 + GFF213 0.22 -0.7 231,535 + GFF213 0.22 -1.5 231,535 + GFF213 0.22 -0.7 231,535 + GFF213 0.22 -0.5 231,536 - GFF213 0.22 +0.3 231,536 - GFF213 0.22 -0.8 231,536 - GFF213 0.22 -0.9 231,832 + GFF213 0.45 -2.0 231,833 - GFF213 0.45 -0.1 231,908 - GFF213 0.51 -1.7 231,994 + GFF213 0.58 -2.9 231,995 - GFF213 0.58 +0.9 232,006 + GFF213 0.59 -1.6 232,007 - GFF213 0.59 -1.0 232,007 - GFF213 0.59 -2.4 232,042 + GFF213 0.61 -1.5 232,042 + GFF213 0.61 -1.4 232,042 + GFF213 0.61 -1.8 232,042 + GFF213 0.61 -1.2 232,043 - GFF213 0.61 -0.7 232,156 + GFF213 0.70 +0.3 232,187 - GFF213 0.73 +0.8 232,252 + GFF213 0.78 -1.0 232,253 - GFF213 0.78 +0.2 232,582 - -0.4 232,588 + -1.0 232,611 + -0.1 232,611 + -0.8 232,611 + +0.2 232,722 + -0.5 232,723 - -0.2 232,723 - -1.7 232,723 - +0.2 232,781 + -1.2 232,781 + -0.5 232,781 + -0.7 232,781 + -0.4 232,782 - +0.1 232,782 - +0.3 232,790 + +0.5 232,790 + -0.0 232,791 - -0.2 232,791 - -0.2 232,791 - +0.4 232,868 + +0.5 232,868 + -0.1 232,868 + +0.2 232,868 + -0.5 232,868 + +0.0 232,869 - -0.0 232,904 + -0.6 232,905 - +0.9 232,994 + +0.0 232,994 + +1.3 233,004 - -1.7 233,009 + +0.0 233,009 + +0.0 233,009 + -0.7 233,010 - -0.1 233,024 + +0.4 233,024 + +0.1 233,024 + +0.0 233,024 + +0.7 233,024 + +0.9 233,024 + +0.1 233,024 + +0.5 233,024 + -0.8 233,024 + -0.5 233,024 + +0.1 233,024 + +0.3 233,025 - -0.1 233,025 - -1.2 233,025 - +0.7 233,025 - -0.1 233,025 - -0.5 233,025 - -0.2 233,025 - -0.3 233,025 - +0.1 233,025 - -0.4 233,058 + -0.2 233,058 + +0.2 233,058 + +1.2 233,084 - +0.1 233,166 - +0.9 233,321 + GFF214 0.11 +0.3 233,321 + GFF214 0.11 +0.8 233,321 + GFF214 0.11 +0.5 233,321 + GFF214 0.11 +0.5 233,321 + GFF214 0.11 +0.3 233,322 - GFF214 0.11 -0.1 233,322 - GFF214 0.11 +0.2 233,322 - GFF214 0.11 +0.3 233,322 - GFF214 0.11 +1.0
Or see this region's nucleotide sequence