Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2071 and GFF2072 overlap by 4 nucleotides GFF2072 and GFF2073 are separated by 34 nucleotides GFF2073 and GFF2074 are separated by 99 nucleotides GFF2074 and GFF2075 overlap by 1 nucleotides
GFF2071 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 957,069 to 957,932
GFF2071
GFF2072 - Enoyl-CoA hydratase (EC 4.2.1.17), at 957,929 to 958,735
GFF2072
GFF2073 - Dihydroxy-acid dehydratase (EC 4.2.1.9), at 958,770 to 960,617
GFF2073
GFF2074 - hypothetical protein, at 960,717 to 961,046
GFF2074
GFF2075 - HipA protein, at 961,046 to 962,374
GFF2075
Position (kb) 958
959
960
961 Strain fitness (log2 ratio) -2
-1
0
1 at 957.781 kb on - strand, within GFF2071 at 957.781 kb on - strand, within GFF2071 at 957.781 kb on - strand, within GFF2071 at 957.781 kb on - strand, within GFF2071 at 957.804 kb on + strand, within GFF2071 at 957.804 kb on + strand, within GFF2071 at 957.805 kb on - strand, within GFF2071 at 958.571 kb on + strand, within GFF2072 at 958.571 kb on + strand, within GFF2072 at 958.572 kb on - strand, within GFF2072 at 958.572 kb on - strand, within GFF2072 at 959.040 kb on + strand, within GFF2073 at 959.041 kb on - strand, within GFF2073 at 959.041 kb on - strand, within GFF2073 at 959.082 kb on + strand, within GFF2073 at 959.082 kb on + strand, within GFF2073 at 959.082 kb on + strand, within GFF2073 at 959.082 kb on + strand, within GFF2073 at 959.082 kb on + strand, within GFF2073 at 959.082 kb on + strand, within GFF2073 at 959.083 kb on - strand, within GFF2073 at 959.083 kb on - strand, within GFF2073 at 959.362 kb on - strand, within GFF2073 at 959.362 kb on - strand, within GFF2073 at 959.362 kb on - strand, within GFF2073 at 959.362 kb on - strand, within GFF2073 at 959.506 kb on - strand, within GFF2073 at 960.012 kb on + strand, within GFF2073 at 960.204 kb on + strand, within GFF2073 at 960.555 kb on + strand at 960.556 kb on - strand at 960.556 kb on - strand at 960.556 kb on - strand at 960.620 kb on + strand at 960.636 kb on + strand at 960.636 kb on + strand at 960.637 kb on - strand at 960.664 kb on - strand at 960.690 kb on + strand at 960.690 kb on + strand at 960.691 kb on - strand at 960.691 kb on - strand at 961.044 kb on + strand at 961.044 kb on + strand at 961.044 kb on + strand at 961.045 kb on - strand at 961.045 kb on - strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.124 kb on + strand at 961.125 kb on - strand at 961.125 kb on - strand at 961.125 kb on - strand at 961.223 kb on + strand, within GFF2075 at 961.223 kb on + strand, within GFF2075 at 961.224 kb on - strand, within GFF2075
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 957,781 - GFF2071 0.82 +0.9 957,781 - GFF2071 0.82 -1.3 957,781 - GFF2071 0.82 +0.3 957,781 - GFF2071 0.82 +1.1 957,804 + GFF2071 0.85 -0.8 957,804 + GFF2071 0.85 +0.2 957,805 - GFF2071 0.85 +0.1 958,571 + GFF2072 0.80 +0.2 958,571 + GFF2072 0.80 +0.5 958,572 - GFF2072 0.80 -0.5 958,572 - GFF2072 0.80 -0.3 959,040 + GFF2073 0.15 -0.1 959,041 - GFF2073 0.15 -1.5 959,041 - GFF2073 0.15 -0.6 959,082 + GFF2073 0.17 +0.6 959,082 + GFF2073 0.17 -0.1 959,082 + GFF2073 0.17 +0.3 959,082 + GFF2073 0.17 -0.1 959,082 + GFF2073 0.17 +0.2 959,082 + GFF2073 0.17 +0.3 959,083 - GFF2073 0.17 +0.2 959,083 - GFF2073 0.17 +0.5 959,362 - GFF2073 0.32 +0.1 959,362 - GFF2073 0.32 -0.2 959,362 - GFF2073 0.32 +1.5 959,362 - GFF2073 0.32 +1.2 959,506 - GFF2073 0.40 -0.9 960,012 + GFF2073 0.67 +0.6 960,204 + GFF2073 0.78 +0.0 960,555 + +0.5 960,556 - -1.5 960,556 - -2.4 960,556 - +0.1 960,620 + -0.5 960,636 + -0.5 960,636 + +0.4 960,637 - -0.6 960,664 - +0.1 960,690 + -1.7 960,690 + -0.0 960,691 - -1.2 960,691 - +0.1 961,044 + -0.0 961,044 + +0.2 961,044 + -0.5 961,045 - -0.3 961,045 - -0.7 961,124 + +0.1 961,124 + -0.3 961,124 + +0.4 961,124 + -0.1 961,124 + -0.4 961,124 + +1.0 961,124 + -0.2 961,124 + +1.2 961,124 + -0.8 961,124 + -1.0 961,124 + +0.1 961,124 + -1.5 961,125 - -0.1 961,125 - +0.1 961,125 - -0.7 961,223 + GFF2075 0.13 -0.3 961,223 + GFF2075 0.13 +0.5 961,224 - GFF2075 0.13 +0.2
Or see this region's nucleotide sequence