Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2066 and GFF2067 are separated by 58 nucleotides GFF2067 and GFF2068 are separated by 240 nucleotides
GFF2066 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 948,247 to 951,735
GFF2066
GFF2067 - hypothetical protein, at 951,794 to 952,081
GFF2067
GFF2068 - Regulatory protein, LuxR:Tetratricopeptide TPR_4, at 952,322 to 955,021
GFF2068
Position (kb) 951
952
953 Strain fitness (log2 ratio) -1
0
1 at 950.834 kb on + strand, within GFF2066 at 950.858 kb on + strand, within GFF2066 at 950.939 kb on + strand, within GFF2066 at 950.940 kb on - strand, within GFF2066 at 950.969 kb on + strand, within GFF2066 at 950.970 kb on - strand, within GFF2066 at 950.970 kb on - strand, within GFF2066 at 951.177 kb on - strand, within GFF2066 at 951.206 kb on + strand, within GFF2066 at 951.249 kb on - strand, within GFF2066 at 951.434 kb on + strand at 951.434 kb on + strand at 951.435 kb on - strand at 951.566 kb on + strand at 951.567 kb on - strand at 951.578 kb on + strand at 951.579 kb on - strand at 951.579 kb on - strand at 951.579 kb on - strand at 951.686 kb on + strand at 951.686 kb on + strand at 951.686 kb on + strand at 951.686 kb on + strand at 951.686 kb on + strand at 951.687 kb on - strand at 951.687 kb on - strand at 951.847 kb on - strand, within GFF2067 at 951.897 kb on + strand, within GFF2067 at 951.898 kb on - strand, within GFF2067 at 952.132 kb on + strand at 952.197 kb on + strand at 952.197 kb on + strand at 952.198 kb on - strand at 952.272 kb on - strand at 952.577 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 950,834 + GFF2066 0.74 +0.9 950,858 + GFF2066 0.75 +0.1 950,939 + GFF2066 0.77 +0.6 950,940 - GFF2066 0.77 +0.5 950,969 + GFF2066 0.78 +0.0 950,970 - GFF2066 0.78 -0.2 950,970 - GFF2066 0.78 +0.0 951,177 - GFF2066 0.84 +1.2 951,206 + GFF2066 0.85 -0.7 951,249 - GFF2066 0.86 +0.9 951,434 + -0.1 951,434 + -0.6 951,435 - -0.0 951,566 + +0.4 951,567 - -0.1 951,578 + -0.5 951,579 - -1.5 951,579 - +0.2 951,579 - +0.1 951,686 + +0.1 951,686 + +0.3 951,686 + -1.2 951,686 + +0.2 951,686 + +0.0 951,687 - +1.6 951,687 - -0.1 951,847 - GFF2067 0.18 +0.3 951,897 + GFF2067 0.36 +0.6 951,898 - GFF2067 0.36 +0.1 952,132 + -0.4 952,197 + +0.5 952,197 + +0.3 952,198 - +0.3 952,272 - +1.2 952,577 + +0.1
Or see this region's nucleotide sequence