Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2062 and GFF2063 are separated by 7 nucleotides GFF2063 and GFF2064 are separated by 126 nucleotides
GFF2062 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6, at 943,586 to 944,980
GFF2062
GFF2063 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 944,988 to 945,668
GFF2063
GFF2064 - D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4), at 945,795 to 947,168
GFF2064
Position (kb) 944
945
946 Strain fitness (log2 ratio) -2
-1
0
1 at 944.009 kb on + strand, within GFF2062 at 944.010 kb on - strand, within GFF2062 at 944.129 kb on + strand, within GFF2062 at 944.129 kb on + strand, within GFF2062 at 944.129 kb on + strand, within GFF2062 at 944.130 kb on - strand, within GFF2062 at 944.130 kb on - strand, within GFF2062 at 944.130 kb on - strand, within GFF2062 at 944.775 kb on - strand, within GFF2062 at 944.775 kb on - strand, within GFF2062 at 944.819 kb on + strand, within GFF2062 at 944.820 kb on - strand, within GFF2062 at 944.897 kb on + strand at 944.898 kb on - strand at 944.898 kb on - strand at 944.973 kb on - strand at 944.973 kb on - strand at 944.990 kb on - strand at 945.187 kb on + strand, within GFF2063 at 945.487 kb on + strand, within GFF2063 at 945.487 kb on + strand, within GFF2063 at 945.488 kb on - strand, within GFF2063 at 945.553 kb on + strand, within GFF2063 at 945.553 kb on + strand, within GFF2063 at 945.554 kb on - strand, within GFF2063 at 945.554 kb on - strand, within GFF2063 at 945.730 kb on - strand at 945.731 kb on + strand at 945.731 kb on + strand at 945.732 kb on - strand at 945.732 kb on - strand at 946.542 kb on + strand, within GFF2064 at 946.543 kb on - strand, within GFF2064 at 946.578 kb on + strand, within GFF2064 at 946.578 kb on + strand, within GFF2064 at 946.579 kb on - strand, within GFF2064
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 944,009 + GFF2062 0.30 +0.6 944,010 - GFF2062 0.30 +1.5 944,129 + GFF2062 0.39 -0.3 944,129 + GFF2062 0.39 -0.5 944,129 + GFF2062 0.39 +0.0 944,130 - GFF2062 0.39 +0.3 944,130 - GFF2062 0.39 +0.1 944,130 - GFF2062 0.39 -0.8 944,775 - GFF2062 0.85 +0.1 944,775 - GFF2062 0.85 -2.6 944,819 + GFF2062 0.88 +0.6 944,820 - GFF2062 0.88 +0.8 944,897 + +0.3 944,898 - -0.5 944,898 - -0.8 944,973 - +0.1 944,973 - -2.4 944,990 - -0.4 945,187 + GFF2063 0.29 +0.3 945,487 + GFF2063 0.73 -0.3 945,487 + GFF2063 0.73 -0.0 945,488 - GFF2063 0.73 +1.1 945,553 + GFF2063 0.83 -0.4 945,553 + GFF2063 0.83 +0.1 945,554 - GFF2063 0.83 +0.2 945,554 - GFF2063 0.83 -0.5 945,730 - -0.4 945,731 + +0.3 945,731 + -0.4 945,732 - +0.2 945,732 - -1.7 946,542 + GFF2064 0.54 -0.2 946,543 - GFF2064 0.54 -0.7 946,578 + GFF2064 0.57 +0.6 946,578 + GFF2064 0.57 -0.9 946,579 - GFF2064 0.57 -0.2
Or see this region's nucleotide sequence