Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1833

Experiment: Ying_Nucleobase14 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1832 and GFF1833 are separated by 27 nucleotidesGFF1833 and GFF1834 are separated by 59 nucleotidesGFF1834 and GFF1835 are separated by 52 nucleotides GFF1832 - DnaJ domain protein, at 696,512 to 697,591 GFF1832 GFF1833 - DNA repair protein RadA, at 697,619 to 698,995 GFF1833 GFF1834 - FIG00933367: hypothetical protein, at 699,055 to 699,513 GFF1834 GFF1835 - Branched-chain amino acid aminotransferase (EC 2.6.1.42), at 699,566 to 700,516 GFF1835 Position (kb) 697 698 699Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 696.861 kb on + strand, within GFF1832at 697.512 kb on + strandat 697.512 kb on + strandat 697.512 kb on + strandat 697.512 kb on + strandat 697.513 kb on - strandat 697.513 kb on - strandat 697.603 kb on + strandat 697.604 kb on - strandat 697.604 kb on - strandat 697.604 kb on - strandat 697.605 kb on + strandat 697.605 kb on + strandat 697.605 kb on + strandat 697.606 kb on - strandat 697.640 kb on + strandat 697.640 kb on + strandat 697.640 kb on + strandat 697.640 kb on + strandat 697.640 kb on + strandat 697.640 kb on + strandat 697.640 kb on + strandat 697.640 kb on + strandat 697.640 kb on + strandat 697.640 kb on + strandat 697.641 kb on - strandat 697.641 kb on - strandat 697.641 kb on - strandat 697.641 kb on - strandat 697.641 kb on - strandat 697.641 kb on - strandat 697.641 kb on - strandat 697.641 kb on - strandat 697.641 kb on - strandat 697.982 kb on + strand, within GFF1833at 697.982 kb on + strand, within GFF1833at 697.982 kb on + strand, within GFF1833at 697.982 kb on + strand, within GFF1833at 697.983 kb on - strand, within GFF1833at 697.983 kb on - strand, within GFF1833at 698.150 kb on + strand, within GFF1833at 698.150 kb on + strand, within GFF1833at 698.151 kb on - strand, within GFF1833at 698.151 kb on - strand, within GFF1833at 698.151 kb on - strand, within GFF1833at 698.327 kb on + strand, within GFF1833at 698.327 kb on + strand, within GFF1833at 698.327 kb on + strand, within GFF1833at 698.328 kb on - strand, within GFF1833at 698.328 kb on - strand, within GFF1833at 698.328 kb on - strand, within GFF1833at 698.328 kb on - strand, within GFF1833at 698.328 kb on - strand, within GFF1833at 699.009 kb on + strandat 699.009 kb on + strandat 699.009 kb on + strandat 699.009 kb on + strandat 699.010 kb on - strandat 699.010 kb on - strandat 699.010 kb on - strandat 699.076 kb on + strandat 699.076 kb on + strandat 699.076 kb on + strandat 699.077 kb on - strandat 699.077 kb on - strandat 699.077 kb on - strandat 699.077 kb on - strandat 699.103 kb on + strand, within GFF1834at 699.103 kb on + strand, within GFF1834at 699.103 kb on + strand, within GFF1834at 699.103 kb on + strand, within GFF1834at 699.103 kb on + strand, within GFF1834at 699.104 kb on - strand, within GFF1834at 699.117 kb on + strand, within GFF1834at 699.117 kb on + strand, within GFF1834at 699.117 kb on + strand, within GFF1834at 699.117 kb on + strand, within GFF1834at 699.117 kb on + strand, within GFF1834at 699.117 kb on + strand, within GFF1834at 699.118 kb on - strand, within GFF1834at 699.118 kb on - strand, within GFF1834at 699.118 kb on - strand, within GFF1834at 699.118 kb on - strand, within GFF1834at 699.118 kb on - strand, within GFF1834at 699.118 kb on - strand, within GFF1834at 699.118 kb on - strand, within GFF1834at 699.118 kb on - strand, within GFF1834at 699.121 kb on + strand, within GFF1834at 699.121 kb on + strand, within GFF1834at 699.121 kb on + strand, within GFF1834at 699.122 kb on - strand, within GFF1834at 699.232 kb on + strand, within GFF1834at 699.232 kb on + strand, within GFF1834at 699.233 kb on - strand, within GFF1834at 699.340 kb on - strand, within GFF1834at 699.355 kb on + strand, within GFF1834at 699.355 kb on + strand, within GFF1834at 699.355 kb on + strand, within GFF1834at 699.355 kb on + strand, within GFF1834at 699.355 kb on + strand, within GFF1834at 699.355 kb on + strand, within GFF1834at 699.355 kb on + strand, within GFF1834at 699.356 kb on - strand, within GFF1834at 699.356 kb on - strand, within GFF1834at 699.356 kb on - strand, within GFF1834at 699.356 kb on - strand, within GFF1834at 699.356 kb on - strand, within GFF1834at 699.356 kb on - strand, within GFF1834at 699.511 kb on + strandat 699.511 kb on + strandat 699.511 kb on + strandat 699.512 kb on - strandat 699.512 kb on - strandat 699.512 kb on - strandat 699.587 kb on - strandat 699.677 kb on + strand, within GFF1835at 699.678 kb on - strand, within GFF1835at 699.678 kb on - strand, within GFF1835at 699.710 kb on + strand, within GFF1835at 699.710 kb on + strand, within GFF1835at 699.711 kb on - strand, within GFF1835at 699.711 kb on - strand, within GFF1835at 699.711 kb on - strand, within GFF1835at 699.869 kb on + strand, within GFF1835at 699.869 kb on + strand, within GFF1835at 699.869 kb on + strand, within GFF1835at 699.869 kb on + strand, within GFF1835at 699.869 kb on + strand, within GFF1835at 699.870 kb on - strand, within GFF1835at 699.870 kb on - strand, within GFF1835at 699.870 kb on - strand, within GFF1835at 699.968 kb on + strand, within GFF1835at 699.968 kb on + strand, within GFF1835at 699.968 kb on + strand, within GFF1835at 699.969 kb on - strand, within GFF1835

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1
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696,861 + GFF1832 0.32 -0.9
697,512 + -0.2
697,512 + +0.3
697,512 + -0.9
697,512 + +0.2
697,513 - +0.4
697,513 - -0.5
697,603 + -0.6
697,604 - +0.3
697,604 - +1.0
697,604 - +0.8
697,605 + -0.4
697,605 + -0.4
697,605 + +0.2
697,606 - +0.5
697,640 + -0.1
697,640 + +0.2
697,640 + +0.6
697,640 + -0.2
697,640 + -0.0
697,640 + -2.9
697,640 + -0.1
697,640 + +0.1
697,640 + -0.0
697,640 + -1.3
697,641 - -0.1
697,641 - -0.9
697,641 - +0.3
697,641 - -0.2
697,641 - -0.1
697,641 - -0.0
697,641 - +0.6
697,641 - -1.3
697,641 - +3.4
697,982 + GFF1833 0.26 +0.1
697,982 + GFF1833 0.26 -0.5
697,982 + GFF1833 0.26 +0.4
697,982 + GFF1833 0.26 +1.0
697,983 - GFF1833 0.26 -0.4
697,983 - GFF1833 0.26 +0.3
698,150 + GFF1833 0.39 -0.2
698,150 + GFF1833 0.39 -0.7
698,151 - GFF1833 0.39 +0.1
698,151 - GFF1833 0.39 +0.5
698,151 - GFF1833 0.39 +0.4
698,327 + GFF1833 0.51 +0.3
698,327 + GFF1833 0.51 +0.8
698,327 + GFF1833 0.51 -1.7
698,328 - GFF1833 0.51 -0.2
698,328 - GFF1833 0.51 +1.4
698,328 - GFF1833 0.51 -0.5
698,328 - GFF1833 0.51 -0.8
698,328 - GFF1833 0.51 +0.7
699,009 + +0.8
699,009 + +0.4
699,009 + +0.0
699,009 + -0.8
699,010 - +0.5
699,010 - +0.8
699,010 - +0.2
699,076 + -0.6
699,076 + -0.1
699,076 + +1.6
699,077 - +0.5
699,077 - -1.7
699,077 - +0.2
699,077 - -0.0
699,103 + GFF1834 0.10 -1.2
699,103 + GFF1834 0.10 -0.1
699,103 + GFF1834 0.10 +0.1
699,103 + GFF1834 0.10 -0.4
699,103 + GFF1834 0.10 -0.2
699,104 - GFF1834 0.11 -0.6
699,117 + GFF1834 0.14 +0.3
699,117 + GFF1834 0.14 +0.3
699,117 + GFF1834 0.14 -0.0
699,117 + GFF1834 0.14 -1.4
699,117 + GFF1834 0.14 +0.3
699,117 + GFF1834 0.14 +0.7
699,118 - GFF1834 0.14 +0.1
699,118 - GFF1834 0.14 +0.3
699,118 - GFF1834 0.14 +0.1
699,118 - GFF1834 0.14 +3.0
699,118 - GFF1834 0.14 +0.3
699,118 - GFF1834 0.14 -0.1
699,118 - GFF1834 0.14 +0.1
699,118 - GFF1834 0.14 +0.4
699,121 + GFF1834 0.14 -0.4
699,121 + GFF1834 0.14 -0.0
699,121 + GFF1834 0.14 +1.3
699,122 - GFF1834 0.15 +0.8
699,232 + GFF1834 0.39 +0.2
699,232 + GFF1834 0.39 +0.8
699,233 - GFF1834 0.39 +0.2
699,340 - GFF1834 0.62 +0.1
699,355 + GFF1834 0.65 -0.0
699,355 + GFF1834 0.65 +0.1
699,355 + GFF1834 0.65 -0.2
699,355 + GFF1834 0.65 -0.2
699,355 + GFF1834 0.65 -0.1
699,355 + GFF1834 0.65 -0.3
699,355 + GFF1834 0.65 -0.0
699,356 - GFF1834 0.66 -0.7
699,356 - GFF1834 0.66 -0.1
699,356 - GFF1834 0.66 +0.8
699,356 - GFF1834 0.66 +0.0
699,356 - GFF1834 0.66 -0.2
699,356 - GFF1834 0.66 +0.5
699,511 + +0.0
699,511 + +0.7
699,511 + +0.5
699,512 - +0.1
699,512 - +0.6
699,512 - +0.0
699,587 - +0.2
699,677 + GFF1835 0.12 +0.2
699,678 - GFF1835 0.12 +0.5
699,678 - GFF1835 0.12 -0.1
699,710 + GFF1835 0.15 -0.4
699,710 + GFF1835 0.15 -0.7
699,711 - GFF1835 0.15 -0.7
699,711 - GFF1835 0.15 -1.6
699,711 - GFF1835 0.15 +0.3
699,869 + GFF1835 0.32 +0.5
699,869 + GFF1835 0.32 +0.3
699,869 + GFF1835 0.32 -0.2
699,869 + GFF1835 0.32 -1.2
699,869 + GFF1835 0.32 +0.6
699,870 - GFF1835 0.32 +0.4
699,870 - GFF1835 0.32 +0.5
699,870 - GFF1835 0.32 -0.0
699,968 + GFF1835 0.42 -0.3
699,968 + GFF1835 0.42 -0.2
699,968 + GFF1835 0.42 +0.0
699,969 - GFF1835 0.42 -0.1

Or see this region's nucleotide sequence